RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 IGKV3OR2-268A0A0C4DH90 116 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 NDUFAF8A1L188 74 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 SDHAF1A6NFY7 115 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 TEX46H3BTG2 121 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 TAGLN2P37802 199 aaKnown RBP3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 POLR2KP53803 58 aaKnown RBP3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 GAGE2BQ13066 116 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 GAGE2EQ4V326 116 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 AMMECR1LQ6DCA0 310 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 EIF5AL1Q6IS14 154 aaKnown RBP3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 GAGE2AQ6NT46 116 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 MRPL52Q86TS9 123 aaKnown RBP3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 LYPD6BQ8NI32 183 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 CDC42SE2Q9NRR3 84 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 GAGE2DQ9UEU5 116 aa3.91□□□□□ -1.78
PRPF40A-210ENST00000489741 A0A087X002 238 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 IGHV1-58A0A0C4DH39 117 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 TRBV27A0A0K0K1C4 114 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 I3L3M4 83 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 CCL25O15444 150 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 APCSP02743 223 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 XCL1P47992 114 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 RNASEKQ6P5S7 137 aaKnown RBP3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 CD164L2Q6UWJ8 174 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 Q6ZRP5 223 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 FAM231DQ6ZW35 169 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 LINC00526Q96FQ7 95 aa3.9□□□□□ -1.79
PRPF40A-210ENST00000489741 LPAP08519 4548 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 A0A1W2PNN7 141 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 A8MWL6 223 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 PMCHP20382 165 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 SNRPEP62304 92 aaKnown RBP3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 SYCNQ0VAF6 134 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 REG3GQ6UW15 175 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 SLC51BQ86UW2 128 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 CARD19Q96LW7 228 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 PYGO1Q9Y3Y4 419 aa3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 CSDC2Q9Y534 153 aaKnown RBP3.89□□□□□ -1.79
PRPF40A-210ENST00000489741 TMEM250H0YL14 139 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 GATCO43716 136 aaKnown RBP3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 RAB4AP20338 218 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 SS18Q15532 418 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 SMIM15Q7Z3B0 74 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 TCTE3Q8IZS6 198 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 ZNF664Q8N3J9 261 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 NUP35Q8NFH5 326 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 TMEM101Q96IK0 257 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 BTF3L4Q96K17 158 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 TMEM191AQ9H0A3 160 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 ST20Q9HBF5 79 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 PKIGQ9Y2B9 76 aa3.88□□□□□ -1.79
PRPF40A-210ENST00000489741 IGLV4-69A0A075B6H9 119 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 LOC107984640A0A0U1RRK4 108 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 C1orf196B1AJZ1 125 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 SCGB1D1O95968 90 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 ADAMTSL4-AS1Q5T5F5 129 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 TSKUQ8WUA8 353 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 FAM104AQ969W3 186 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 MRAP2Q96G30 205 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 PRAC1Q96KF2 57 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 TMEM242Q9NWH2 141 aa3.87□□□□□ -1.79
PRPF40A-210ENST00000489741 A0A1B0GUT8 65 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 C7orf77A4D0Y5 90 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 COX7A2LO14548 114 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 LINC01551Q86U37 167 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 ISOC2Q96AB3 205 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 C2orf48Q96LS8 159 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 PSORS1C2Q9UIG4 136 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 UBE2D4Q9Y2X8 147 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 MUC2Q02817 5179 aa3.86□□□□□ -1.79
PRPF40A-210ENST00000489741 IGLV9-49A0A0B4J1Y8 123 aa3.85□□□□□ -1.79
PRPF40A-210ENST00000489741 HIGD1CA8MV81 97 aa3.85□□□□□ -1.79
PRPF40A-210ENST00000489741 APOMO95445 188 aa3.85□□□□□ -1.79
PRPF40A-210ENST00000489741 C9orf116Q5BN46 136 aaPredicted RBP3.85□□□□□ -1.79
PRPF40A-210ENST00000489741 AMN1Q8IY45 258 aa3.85□□□□□ -1.79
PRPF40A-210ENST00000489741 TIMM21Q9BVV7 248 aa3.85□□□□□ -1.79
PRPF40A-210ENST00000489741 OSTCQ9NRP0 149 aa3.85□□□□□ -1.79
PRPF40A-210ENST00000489741 TRBV24-1A0A075B6N3 115 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 IGHV3OR16-9A0A0B4J2B5 98 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 LOC105371267A0A1B0GV96 52 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 KRTAP16-1A8MUX0 517 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 SMKR1H3BMG3 65 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 PPP1R17O96001 155 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 RPL32P62910 135 aaKnown RBP3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 PHF5AQ7RTV0 110 aaKnown RBP3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 C5orf38Q86SI9 138 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 KRTAP11-1Q8IUC1 163 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 LINC00469Q8N7U9 141 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 CAMK2N2Q96S95 79 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 V9GYV3 84 aa3.84□□□□□ -1.79
PRPF40A-210ENST00000489741 TRAV13-1A0A0B4J241 112 aa3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 F8WDY8 70 aa3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 IGLV7-43P04211 117 aa3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 S100A6P06703 90 aa3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 TLX1NBP0CAT3 122 aa3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 RNASE13Q5GAN3 156 aaKnown RBP3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 FAM104BQ5XKR9 115 aa3.83□□□□□ -1.8
PRPF40A-210ENST00000489741 ALKAL2Q6UX46 152 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms