RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 SPANXA1Q9NS26 97 aa11.62□□□□□ -0.55
PRPF40A-209ENST00000486100 LINC00474Q9P2X8 69 aa11.62□□□□□ -0.55
PRPF40A-209ENST00000486100 PKHD1L1Q86WI1 4243 aa11.61□□□□□ -0.55
PRPF40A-209ENST00000486100 ATP6V1G1O75348 118 aa11.61□□□□□ -0.55
PRPF40A-209ENST00000486100 STPG4Q8N801 248 aa11.61□□□□□ -0.55
PRPF40A-209ENST00000486100 IGLV4-69A0A075B6H9 119 aa11.6□□□□□ -0.55
PRPF40A-209ENST00000486100 PRSS47A8MTI9 375 aa11.6□□□□□ -0.55
PRPF40A-209ENST00000486100 RAB5AP20339 215 aa11.6□□□□□ -0.55
PRPF40A-209ENST00000486100 MRPS36P82909 103 aaKnown RBP11.6□□□□□ -0.55
PRPF40A-209ENST00000486100 C5orf38Q86SI9 138 aa11.6□□□□□ -0.55
PRPF40A-209ENST00000486100 C7orf33Q8WU49 177 aa11.6□□□□□ -0.55
PRPF40A-209ENST00000486100 IMMP2LQ96T52 175 aa11.6□□□□□ -0.55
PRPF40A-209ENST00000486100 OPRPNQ99935 248 aaPredicted RBP11.59□□□□□ -0.55
PRPF40A-209ENST00000486100 APOMO95445 188 aa11.58□□□□□ -0.56
PRPF40A-209ENST00000486100 LAMTOR2Q9Y2Q5 125 aa11.58□□□□□ -0.56
PRPF40A-209ENST00000486100 Q6ZRU5 148 aa11.57□□□□□ -0.56
PRPF40A-209ENST00000486100 C2orf48Q96LS8 159 aa11.57□□□□□ -0.56
PRPF40A-209ENST00000486100 CAMK2N2Q96S95 79 aa11.57□□□□□ -0.56
PRPF40A-209ENST00000486100 TRAV9-1A0A075B6T8 112 aa11.56□□□□□ -0.56
PRPF40A-209ENST00000486100 RPS10P5Q9NQ39 176 aa11.56□□□□□ -0.56
PRPF40A-209ENST00000486100 PYGO1Q9Y3Y4 419 aa11.56□□□□□ -0.56
PRPF40A-209ENST00000486100 IGHV3OR16-9A0A0B4J2B5 98 aa11.55□□□□□ -0.56
PRPF40A-209ENST00000486100 LOC107984640A0A0U1RRK4 108 aa11.55□□□□□ -0.56
PRPF40A-209ENST00000486100 LOC389332A0A1B0GUA5 103 aa11.55□□□□□ -0.56
PRPF40A-209ENST00000486100 IFI27P40305 119 aaPredicted RBP11.55□□□□□ -0.56
PRPF40A-209ENST00000486100 MAP1LC3AQ9H492 121 aa11.55□□□□□ -0.56
PRPF40A-209ENST00000486100 IFITM10A6NMD0 228 aa11.54□□□□□ -0.56
PRPF40A-209ENST00000486100 S100PP25815 95 aa11.54□□□□□ -0.56
PRPF40A-209ENST00000486100 PTTG1IPP53801 180 aa11.54□□□□□ -0.56
PRPF40A-209ENST00000486100 OR10D4PQ8NGN7 298 aa11.54□□□□□ -0.56
PRPF40A-209ENST00000486100 SPAG11BQ08648 103 aa11.53□□□□□ -0.56
PRPF40A-209ENST00000486100 Q8N8P6 123 aa11.53□□□□□ -0.56
PRPF40A-209ENST00000486100 GAGE2BQ13066 116 aa11.52□□□□□ -0.57
PRPF40A-209ENST00000486100 SERTAD4-AS1Q5TG53 156 aa11.52□□□□□ -0.57
PRPF40A-209ENST00000486100 IGLV4-3A0A075B6K6 122 aa11.51□□□□□ -0.57
PRPF40A-209ENST00000486100 F8WDY8 70 aa11.51□□□□□ -0.57
PRPF40A-209ENST00000486100 RNF151Q2KHN1 245 aa11.51□□□□□ -0.57
PRPF40A-209ENST00000486100 ORAOV1Q8WV07 137 aa11.51□□□□□ -0.57
PRPF40A-209ENST00000486100 SMCO4Q9NRQ5 59 aa11.51□□□□□ -0.57
PRPF40A-209ENST00000486100 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.5□□□□□ -0.57
PRPF40A-209ENST00000486100 PRR3P79522 188 aaKnown RBP11.5□□□□□ -0.57
PRPF40A-209ENST00000486100 TMEM141Q96I45 108 aa11.5□□□□□ -0.57
PRPF40A-209ENST00000486100 TGIF2-C20orf24A0A0A6YYL0 155 aa11.49□□□□□ -0.57
PRPF40A-209ENST00000486100 ORMDL2Q53FV1 153 aa11.49□□□□□ -0.57
PRPF40A-209ENST00000486100 CYSLTR1Q9Y271 337 aa11.49□□□□□ -0.57
PRPF40A-209ENST00000486100 K7EMI3 77 aa11.48□□□□□ -0.57
PRPF40A-209ENST00000486100 COX19Q49B96 90 aa11.48□□□□□ -0.57
PRPF40A-209ENST00000486100 LINC00242Q5T6M2 205 aa11.48□□□□□ -0.57
PRPF40A-209ENST00000486100 C2orf66Q6UXQ4 117 aa11.48□□□□□ -0.57
PRPF40A-209ENST00000486100 TEX43Q6ZNM6 134 aa11.48□□□□□ -0.57
PRPF40A-209ENST00000486100 MRPL35Q9NZE8 188 aaKnown RBP11.48□□□□□ -0.57
PRPF40A-209ENST00000486100 A0A087WZ39 114 aa11.47□□□□□ -0.57
PRPF40A-209ENST00000486100 A0A0J9YXV3 536 aa11.47□□□□□ -0.57
PRPF40A-209ENST00000486100 A0A1W2PNN7 141 aa11.47□□□□□ -0.57
PRPF40A-209ENST00000486100 NXT2Q9NPJ8 142 aaKnown RBP11.47□□□□□ -0.57
PRPF40A-209ENST00000486100 NDUFA1O15239 70 aa11.46□□□□□ -0.57
PRPF40A-209ENST00000486100 MT1HL1P0DM35 61 aa11.46□□□□□ -0.57
PRPF40A-209ENST00000486100 RPL18AQ02543 176 aaKnown RBP11.46□□□□□ -0.57
PRPF40A-209ENST00000486100 HMCN2Q8NDA2 5059 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 NPSP0C0P6 89 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 UBE2D1P51668 147 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 Q6ZN92 141 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 Q6ZRP5 223 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 AMELXQ99217 191 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 C2orf88Q9BSF0 95 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 VCX2Q9H322 139 aa11.45□□□□□ -0.58
PRPF40A-209ENST00000486100 IGIPA6NJ69 53 aa11.44□□□□□ -0.58
PRPF40A-209ENST00000486100 KIAA0087Q14695 138 aa11.44□□□□□ -0.58
PRPF40A-209ENST00000486100 C9orf116Q5BN46 136 aaPredicted RBP11.44□□□□□ -0.58
PRPF40A-209ENST00000486100 C10orf25Q5T742 122 aa11.44□□□□□ -0.58
PRPF40A-209ENST00000486100 UNQ6190/PRO20217Q6UXQ8 127 aa11.44□□□□□ -0.58
PRPF40A-209ENST00000486100 G0S2P27469 103 aa11.43□□□□□ -0.58
PRPF40A-209ENST00000486100 KIAA1644Q3SXP7 199 aa11.43□□□□□ -0.58
PRPF40A-209ENST00000486100 ZC2HC1BQ5TFG8 222 aa11.43□□□□□ -0.58
PRPF40A-209ENST00000486100 LINC01561Q8N1V8 128 aa11.43□□□□□ -0.58
PRPF40A-209ENST00000486100 SPINK6Q6UWN8 80 aa11.42□□□□□ -0.58
PRPF40A-209ENST00000486100 LINC00173Q6ZV60 143 aa11.42□□□□□ -0.58
PRPF40A-209ENST00000486100 C6orf48Q9UBA6 75 aa11.42□□□□□ -0.58
PRPF40A-209ENST00000486100 MT-ND6P03923 174 aa11.41□□□□□ -0.58
PRPF40A-209ENST00000486100 TLX1NBP0CAT3 122 aa11.41□□□□□ -0.58
PRPF40A-209ENST00000486100 CBLN2Q8IUK8 224 aa11.41□□□□□ -0.58
PRPF40A-209ENST00000486100 YPEL4Q96NS1 127 aa11.41□□□□□ -0.58
PRPF40A-209ENST00000486100 SRSF9Q13242 221 aaKnown RBP eCLIP11.4□□□□□ -0.58
PRPF40A-209ENST00000486100 PAPPA-AS1Q5QFB9 102 aa11.4□□□□□ -0.58
PRPF40A-209ENST00000486100 FAM19A3Q7Z5A8 133 aa11.4□□□□□ -0.58
PRPF40A-209ENST00000486100 GNB1LQ9BYB4 327 aa11.4□□□□□ -0.58
PRPF40A-209ENST00000486100 TOMM6Q96B49 74 aa11.39□□□□□ -0.59
PRPF40A-209ENST00000486100 LINC01600Q96MT4 127 aa11.38□□□□□ -0.59
PRPF40A-209ENST00000486100 TIMM17AQ99595 171 aa11.38□□□□□ -0.59
PRPF40A-209ENST00000486100 TRBV30A0A0K0K1B3 111 aa11.37□□□□□ -0.59
PRPF40A-209ENST00000486100 SEC11AP67812 179 aa11.37□□□□□ -0.59
PRPF40A-209ENST00000486100 C2orf82Q6UX34 121 aa11.37□□□□□ -0.59
PRPF40A-209ENST00000486100 PHF5AQ7RTV0 110 aaKnown RBP11.37□□□□□ -0.59
PRPF40A-209ENST00000486100 PLA2G2DQ9UNK4 145 aa11.37□□□□□ -0.59
PRPF40A-209ENST00000486100 PACRGQ96M98 296 aaPredicted RBP11.36□□□□□ -0.59
PRPF40A-209ENST00000486100 ALKBH7Q9BT30 221 aaPredicted RBP11.36□□□□□ -0.59
PRPF40A-209ENST00000486100 PSORS1C2Q9UIG4 136 aa11.36□□□□□ -0.59
PRPF40A-209ENST00000486100 HERVK_113P63121 156 aa11.35□□□□□ -0.59
PRPF40A-209ENST00000486100 GAGE2EQ4V326 116 aa11.35□□□□□ -0.59
PRPF40A-209ENST00000486100 REG3GQ6UW15 175 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms