RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 PYGO1Q9Y3Y4 419 aa6.67□□□□□ -1.34
COL4A1-203ENST00000474391 ZNF561-AS1K7EIQ3 104 aa6.66□□□□□ -1.34
COL4A1-203ENST00000474391 RAB5AP20339 215 aa6.66□□□□□ -1.34
COL4A1-203ENST00000474391 SYCNQ0VAF6 134 aa6.66□□□□□ -1.34
COL4A1-203ENST00000474391 COX19Q49B96 90 aa6.66□□□□□ -1.34
COL4A1-203ENST00000474391 CARD19Q96LW7 228 aa6.66□□□□□ -1.34
COL4A1-203ENST00000474391 OPRPNQ99935 248 aaPredicted RBP6.66□□□□□ -1.34
COL4A1-203ENST00000474391 IGLV4-69A0A075B6H9 119 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 A0A096LNI7 61 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 IGHV3OR16-9A0A0B4J2B5 98 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 MALP21145 153 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 Q8N8P6 123 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 DPH3Q96FX2 82 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 MAP1LC3AQ9H492 121 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 LINC00474Q9P2X8 69 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 PKIGQ9Y2B9 76 aa6.65□□□□□ -1.34
COL4A1-203ENST00000474391 IGKV2-24A0A0C4DH68 120 aa6.64□□□□□ -1.35
COL4A1-203ENST00000474391 K7EMI3 77 aa6.64□□□□□ -1.35
COL4A1-203ENST00000474391 IFI27P40305 119 aaPredicted RBP6.64□□□□□ -1.35
COL4A1-203ENST00000474391 HNRNPA3P51991 378 aaKnown RBP6.64□□□□□ -1.35
COL4A1-203ENST00000474391 C5orf38Q86SI9 138 aa6.64□□□□□ -1.35
COL4A1-203ENST00000474391 C2orf48Q96LS8 159 aa6.64□□□□□ -1.35
COL4A1-203ENST00000474391 LRP1Q07954 4544 aaKnown RBP6.63□□□□□ -1.35
COL4A1-203ENST00000474391 IGLV4-3A0A075B6K6 122 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 LOC389332A0A1B0GUA5 103 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 IFITM10A6NMD0 228 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 J3QL48 77 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 APOMO95445 188 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 OXTP01178 125 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 MAJINQ3KP22 176 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 Q6ZRU5 148 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 STPG4Q8N801 248 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 OR10D4PQ8NGN7 298 aa6.63□□□□□ -1.35
COL4A1-203ENST00000474391 MT-ND6P03923 174 aa6.62□□□□□ -1.35
COL4A1-203ENST00000474391 ORMDL2Q53FV1 153 aa6.62□□□□□ -1.35
COL4A1-203ENST00000474391 CAMK2N2Q96S95 79 aa6.62□□□□□ -1.35
COL4A1-203ENST00000474391 TGIF2-C20orf24A0A0A6YYL0 155 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 LOC107984640A0A0U1RRK4 108 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 NPSP0C0P6 89 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 PTTG1IPP53801 180 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 SPAG11BQ08648 103 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 RNF151Q2KHN1 245 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 LINC00242Q5T6M2 205 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 C2orf66Q6UXQ4 117 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 C7orf33Q8WU49 177 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 TMEM141Q96I45 108 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 GNB1LQ9BYB4 327 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 NXT2Q9NPJ8 142 aaKnown RBP6.61□□□□□ -1.35
COL4A1-203ENST00000474391 CYSLTR1Q9Y271 337 aa6.61□□□□□ -1.35
COL4A1-203ENST00000474391 A0A087WZ39 114 aa6.6□□□□□ -1.35
COL4A1-203ENST00000474391 IGIPA6NJ69 53 aa6.6□□□□□ -1.35
COL4A1-203ENST00000474391 F8WDY8 70 aa6.6□□□□□ -1.35
COL4A1-203ENST00000474391 LINC00173Q6ZV60 143 aa6.6□□□□□ -1.35
COL4A1-203ENST00000474391 ORAOV1Q8WV07 137 aa6.6□□□□□ -1.35
COL4A1-203ENST00000474391 AMELXQ99217 191 aa6.6□□□□□ -1.35
COL4A1-203ENST00000474391 MRPL35Q9NZE8 188 aaKnown RBP6.6□□□□□ -1.35
COL4A1-203ENST00000474391 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.59□□□□□ -1.35
COL4A1-203ENST00000474391 UBE2D1P51668 147 aa6.59□□□□□ -1.35
COL4A1-203ENST00000474391 TEX43Q6ZNM6 134 aa6.59□□□□□ -1.35
COL4A1-203ENST00000474391 PKHD1L1Q86WI1 4243 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 G0S2P27469 103 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 PRR3P79522 188 aaKnown RBP6.58□□□□□ -1.36
COL4A1-203ENST00000474391 KIAA0087Q14695 138 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 KIAA1644Q3SXP7 199 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 Q6ZN92 141 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 FAM19A3Q7Z5A8 133 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 LINC01561Q8N1V8 128 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 TMA7Q9Y2S6 64 aaKnown RBP6.58□□□□□ -1.36
COL4A1-203ENST00000474391 FAT3Q8TDW7 4589 aa6.58□□□□□ -1.36
COL4A1-203ENST00000474391 LINC01546A6NGU7 62 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 NDUFA1O15239 70 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 GAGE2BQ13066 116 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 ZC2HC1BQ5TFG8 222 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 TOMM6Q96B49 74 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 TIMM17AQ99595 171 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 C2orf88Q9BSF0 95 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 ALKBH7Q9BT30 221 aaPredicted RBP6.57□□□□□ -1.36
COL4A1-203ENST00000474391 VCX2Q9H322 139 aa6.57□□□□□ -1.36
COL4A1-203ENST00000474391 A0A0J9YXV3 536 aa6.56□□□□□ -1.36
COL4A1-203ENST00000474391 A0A1W2PNN7 141 aa6.56□□□□□ -1.36
COL4A1-203ENST00000474391 TLX1NBP0CAT3 122 aa6.56□□□□□ -1.36
COL4A1-203ENST00000474391 C10orf25Q5T742 122 aa6.56□□□□□ -1.36
COL4A1-203ENST00000474391 TRGC2P03986 189 aa6.55□□□□□ -1.36
COL4A1-203ENST00000474391 RAB5BP61020 215 aa6.55□□□□□ -1.36
COL4A1-203ENST00000474391 C9orf116Q5BN46 136 aaPredicted RBP6.55□□□□□ -1.36
COL4A1-203ENST00000474391 PAPPA-AS1Q5QFB9 102 aa6.55□□□□□ -1.36
COL4A1-203ENST00000474391 UNQ6190/PRO20217Q6UXQ8 127 aa6.55□□□□□ -1.36
COL4A1-203ENST00000474391 ERASQ7Z444 233 aa6.55□□□□□ -1.36
COL4A1-203ENST00000474391 C6orf48Q9UBA6 75 aa6.55□□□□□ -1.36
COL4A1-203ENST00000474391 TRAPPC1Q9Y5R8 145 aa6.55□□□□□ -1.36
COL4A1-203ENST00000474391 LINC01549A6NIU2 74 aa6.54□□□□□ -1.36
COL4A1-203ENST00000474391 MT1HL1P0DM35 61 aa6.54□□□□□ -1.36
COL4A1-203ENST00000474391 RPL18AQ02543 176 aaKnown RBP6.54□□□□□ -1.36
COL4A1-203ENST00000474391 Q6ZRP5 223 aa6.54□□□□□ -1.36
COL4A1-203ENST00000474391 MRPL18Q9H0U6 180 aaKnown RBP6.54□□□□□ -1.36
COL4A1-203ENST00000474391 TRBV30A0A0K0K1B3 111 aa6.53□□□□□ -1.36
COL4A1-203ENST00000474391 HERVK_113P63121 156 aa6.53□□□□□ -1.36
COL4A1-203ENST00000474391 SEC11AP67812 179 aa6.53□□□□□ -1.36
COL4A1-203ENST00000474391 COA6Q5JTJ3 125 aaKnown RBP6.53□□□□□ -1.36
COL4A1-203ENST00000474391 HIST1H2BKO60814 126 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms