RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TMEM101Q96IK0 257 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 TMEM191AQ9H0A3 160 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 PKIGQ9Y2B9 76 aa4.56□□□□□ -1.68
USP54-208ENST00000461520 A0A1B0GUT8 65 aa4.55□□□□□ -1.68
USP54-208ENST00000461520 CEBPGP53567 150 aa4.55□□□□□ -1.68
USP54-208ENST00000461520 MRPL52Q86TS9 123 aaKnown RBP4.55□□□□□ -1.68
USP54-208ENST00000461520 TSKUQ8WUA8 353 aa4.55□□□□□ -1.68
USP54-208ENST00000461520 MRAP2Q96G30 205 aa4.55□□□□□ -1.68
USP54-208ENST00000461520 ST20Q9HBF5 79 aa4.55□□□□□ -1.68
USP54-208ENST00000461520 IGHV1-58A0A0C4DH39 117 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 IGKV2-24A0A0C4DH68 120 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 TRBV27A0A0K0K1C4 114 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 LINC00959A0A1B0GUT2 108 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 HIGD1CA8MV81 97 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 PHOX2AO14813 284 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 CCL25O15444 150 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 TSHBP01222 138 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 MT1HL1P0DM35 61 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 RAB4AP20338 218 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 XCL1P47992 114 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 POLR2KP53803 58 aaKnown RBP4.54□□□□□ -1.68
USP54-208ENST00000461520 SS18Q15532 418 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 MAJINQ3KP22 176 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 LINC01551Q86U37 167 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 SMIM7Q9BQ49 75 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 EIF5A2Q9GZV4 153 aaKnown RBP4.54□□□□□ -1.68
USP54-208ENST00000461520 OSTCQ9NRP0 149 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 CDC42SE2Q9NRR3 84 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 LINC00474Q9P2X8 69 aa4.54□□□□□ -1.68
USP54-208ENST00000461520 C7orf77A4D0Y5 90 aa4.53□□□□□ -1.68
USP54-208ENST00000461520 ZNF727A8MUV8 499 aa4.53□□□□□ -1.68
USP54-208ENST00000461520 PPP1R17O96001 155 aa4.53□□□□□ -1.68
USP54-208ENST00000461520 CD164L2Q6UWJ8 174 aa4.53□□□□□ -1.68
USP54-208ENST00000461520 ZNF664Q8N3J9 261 aa4.53□□□□□ -1.68
USP54-208ENST00000461520 TMEM242Q9NWH2 141 aa4.53□□□□□ -1.68
USP54-208ENST00000461520 TNXBP22105 4242 aa4.53□□□□□ -1.68
USP54-208ENST00000461520 A0A096LNI7 61 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 C1orf196B1AJZ1 125 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 SRP19P09132 144 aaKnown RBP4.52□□□□□ -1.69
USP54-208ENST00000461520 SMAGPQ0VAQ4 97 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 RIGQ13278 110 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 AMN1Q8IY45 258 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 NUP35Q8NFH5 326 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 CARD19Q96LW7 228 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 CSDC2Q9Y534 153 aaKnown RBP4.52□□□□□ -1.69
USP54-208ENST00000461520 V9GYV3 84 aa4.52□□□□□ -1.69
USP54-208ENST00000461520 PPP1R2P9O14990 202 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 FCER1GP30273 86 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 PRR3P79522 188 aaKnown RBP4.51□□□□□ -1.69
USP54-208ENST00000461520 SYCNQ0VAF6 134 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 FAM74A3Q4VXF1 159 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 Q75L30 129 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 ISOC2Q96AB3 205 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 LINC01600Q96MT4 127 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 KIR2DL4Q99706 377 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 NAT8BQ9UHF3 227 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 UBE2D4Q9Y2X8 147 aa4.51□□□□□ -1.69
USP54-208ENST00000461520 A0A087X002 238 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 LINC00862A6NCI5 91 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 KRTAP16-1A8MUX0 517 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 SMKR1H3BMG3 65 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 CAMPP49913 170 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 TMEM241Q24JQ0 296 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 SPINK6Q6UWN8 80 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 LINC00526Q96FQ7 95 aa4.5□□□□□ -1.69
USP54-208ENST00000461520 IGLV4-69A0A075B6H9 119 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 LOC107984640A0A0U1RRK4 108 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 COX7A2LO14548 114 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 TCAPO15273 167 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 RPL23P62829 140 aaKnown RBP4.49□□□□□ -1.69
USP54-208ENST00000461520 RPL32P62910 135 aaKnown RBP4.49□□□□□ -1.69
USP54-208ENST00000461520 MRPL51Q4U2R6 128 aaKnown RBP4.49□□□□□ -1.69
USP54-208ENST00000461520 FAM104BQ5XKR9 115 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 Q6ZRP5 223 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 C20orf78Q9BR46 151 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 TIMM21Q9BVV7 248 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 NAT8Q9UHE5 227 aa4.49□□□□□ -1.69
USP54-208ENST00000461520 TRBV24-1A0A075B6N3 115 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 TRAV13-1A0A0B4J241 112 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 A0A1B0GW15 77 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 SMIM27A0A1W2PRY6 76 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 C9JQL5 133 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 APOMO95445 188 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 ADIRFQ15847 76 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 REG3GQ6UW15 175 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 C2orf48Q96LS8 159 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 CAMK2N2Q96S95 79 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 SMDT1Q9H4I9 107 aa4.48□□□□□ -1.69
USP54-208ENST00000461520 A0A0J9YXV3 536 aa4.47□□□□□ -1.69
USP54-208ENST00000461520 S100A8P05109 93 aa4.47□□□□□ -1.69
USP54-208ENST00000461520 CKS2P33552 79 aa4.47□□□□□ -1.69
USP54-208ENST00000461520 GAGE2BQ13066 116 aa4.47□□□□□ -1.69
USP54-208ENST00000461520 SRSF9Q13242 221 aaKnown RBP eCLIP4.47□□□□□ -1.69
USP54-208ENST00000461520 RNASE13Q5GAN3 156 aaKnown RBP4.47□□□□□ -1.69
USP54-208ENST00000461520 Q6ZUT4 128 aa4.47□□□□□ -1.69
USP54-208ENST00000461520 C5orf38Q86SI9 138 aa4.47□□□□□ -1.69
USP54-208ENST00000461520 F8W036 122 aa4.46□□□□□ -1.7
USP54-208ENST00000461520 F8WDY8 70 aa4.46□□□□□ -1.7
USP54-208ENST00000461520 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.46□□□□□ -1.7
USP54-208ENST00000461520 KRTAP10-8P60410 259 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms