RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 IGHV3OR16-9A0A0B4J2B5 98 aa12.31□□□□□ -0.44
TSPAN4-209ENST00000409543 IFITM10A6NMD0 228 aa12.31□□□□□ -0.44
TSPAN4-209ENST00000409543 IFI27P40305 119 aaPredicted RBP12.31□□□□□ -0.44
TSPAN4-209ENST00000409543 MAP1LC3AQ9H492 121 aa12.31□□□□□ -0.44
TSPAN4-209ENST00000409543 LOC107984640A0A0U1RRK4 108 aa12.3□□□□□ -0.44
TSPAN4-209ENST00000409543 LOC389332A0A1B0GUA5 103 aa12.3□□□□□ -0.44
TSPAN4-209ENST00000409543 UQCC3Q6UW78 93 aa12.3□□□□□ -0.44
TSPAN4-209ENST00000409543 OR10D4PQ8NGN7 298 aa12.3□□□□□ -0.44
TSPAN4-209ENST00000409543 PTTG1IPP53801 180 aa12.29□□□□□ -0.44
TSPAN4-209ENST00000409543 SPAG11BQ08648 103 aa12.29□□□□□ -0.44
TSPAN4-209ENST00000409543 Q8N8P6 123 aa12.29□□□□□ -0.44
TSPAN4-209ENST00000409543 IMMP2LQ96T52 175 aa12.29□□□□□ -0.44
TSPAN4-209ENST00000409543 IFITM2Q01629 132 aa12.28□□□□□ -0.44
TSPAN4-209ENST00000409543 IGLV4-3A0A075B6K6 122 aa12.27□□□□□ -0.45
TSPAN4-209ENST00000409543 ADCYAP1P18509 176 aa12.27□□□□□ -0.45
TSPAN4-209ENST00000409543 GAGE2BQ13066 116 aa12.27□□□□□ -0.45
TSPAN4-209ENST00000409543 RNF151Q2KHN1 245 aa12.27□□□□□ -0.45
TSPAN4-209ENST00000409543 TMEM218A2RU14 115 aa12.26□□□□□ -0.45
TSPAN4-209ENST00000409543 F8WDY8 70 aa12.26□□□□□ -0.45
TSPAN4-209ENST00000409543 PRR3P79522 188 aaKnown RBP12.26□□□□□ -0.45
TSPAN4-209ENST00000409543 SERTAD4-AS1Q5TG53 156 aa12.26□□□□□ -0.45
TSPAN4-209ENST00000409543 ORAOV1Q8WV07 137 aa12.26□□□□□ -0.45
TSPAN4-209ENST00000409543 TMEM141Q96I45 108 aa12.26□□□□□ -0.45
TSPAN4-209ENST00000409543 CTDSP1Q9GZU7 261 aa12.26□□□□□ -0.45
TSPAN4-209ENST00000409543 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.25□□□□□ -0.45
TSPAN4-209ENST00000409543 K7EMI3 77 aa12.25□□□□□ -0.45
TSPAN4-209ENST00000409543 CYSLTR1Q9Y271 337 aa12.25□□□□□ -0.45
TSPAN4-209ENST00000409543 TGIF2-C20orf24A0A0A6YYL0 155 aa12.24□□□□□ -0.45
TSPAN4-209ENST00000409543 ORMDL2Q53FV1 153 aa12.24□□□□□ -0.45
TSPAN4-209ENST00000409543 LINC00242Q5T6M2 205 aa12.24□□□□□ -0.45
TSPAN4-209ENST00000409543 MRPL35Q9NZE8 188 aaKnown RBP12.24□□□□□ -0.45
TSPAN4-209ENST00000409543 A0A087WZ39 114 aa12.23□□□□□ -0.45
TSPAN4-209ENST00000409543 C2orf66Q6UXQ4 117 aa12.23□□□□□ -0.45
TSPAN4-209ENST00000409543 TEX43Q6ZNM6 134 aa12.23□□□□□ -0.45
TSPAN4-209ENST00000409543 NXT2Q9NPJ8 142 aaKnown RBP12.23□□□□□ -0.45
TSPAN4-209ENST00000409543 TRAV9-1A0A075B6T8 112 aa12.22□□□□□ -0.45
TSPAN4-209ENST00000409543 A0A0J9YXV3 536 aa12.22□□□□□ -0.45
TSPAN4-209ENST00000409543 A0A1W2PNN7 141 aa12.21□□□□□ -0.45
TSPAN4-209ENST00000409543 NDUFA1O15239 70 aa12.21□□□□□ -0.45
TSPAN4-209ENST00000409543 NPSP0C0P6 89 aa12.21□□□□□ -0.45
TSPAN4-209ENST00000409543 MT1HL1P0DM35 61 aa12.21□□□□□ -0.45
TSPAN4-209ENST00000409543 C2orf88Q9BSF0 95 aa12.21□□□□□ -0.45
TSPAN4-209ENST00000409543 SEC11CQ9BY50 192 aa12.21□□□□□ -0.45
TSPAN4-209ENST00000409543 UBE2D1P51668 147 aa12.2□□□□□ -0.46
TSPAN4-209ENST00000409543 RPL18AQ02543 176 aaKnown RBP12.2□□□□□ -0.46
TSPAN4-209ENST00000409543 Q6ZN92 141 aa12.2□□□□□ -0.46
TSPAN4-209ENST00000409543 IGIPA6NJ69 53 aa12.19□□□□□ -0.46
TSPAN4-209ENST00000409543 Q6ZRP5 223 aa12.19□□□□□ -0.46
TSPAN4-209ENST00000409543 AMELXQ99217 191 aa12.19□□□□□ -0.46
TSPAN4-209ENST00000409543 VCX2Q9H322 139 aa12.19□□□□□ -0.46
TSPAN4-209ENST00000409543 G0S2P27469 103 aa12.18□□□□□ -0.46
TSPAN4-209ENST00000409543 KIAA0087Q14695 138 aa12.18□□□□□ -0.46
TSPAN4-209ENST00000409543 C9orf116Q5BN46 136 aaPredicted RBP12.18□□□□□ -0.46
TSPAN4-209ENST00000409543 C10orf25Q5T742 122 aa12.18□□□□□ -0.46
TSPAN4-209ENST00000409543 UNQ6190/PRO20217Q6UXQ8 127 aa12.18□□□□□ -0.46
TSPAN4-209ENST00000409543 LINC00173Q6ZV60 143 aa12.18□□□□□ -0.46
TSPAN4-209ENST00000409543 LINC01561Q8N1V8 128 aa12.18□□□□□ -0.46
TSPAN4-209ENST00000409543 TLX1NBP0CAT3 122 aa12.17□□□□□ -0.46
TSPAN4-209ENST00000409543 KIAA1644Q3SXP7 199 aa12.17□□□□□ -0.46
TSPAN4-209ENST00000409543 ZC2HC1BQ5TFG8 222 aa12.17□□□□□ -0.46
TSPAN4-209ENST00000409543 HMCN2Q8NDA2 5059 aa12.17□□□□□ -0.46
TSPAN4-209ENST00000409543 S100PP25815 95 aa12.16□□□□□ -0.46
TSPAN4-209ENST00000409543 SPINK6Q6UWN8 80 aa12.16□□□□□ -0.46
TSPAN4-209ENST00000409543 COMMD7Q86VX2 200 aa12.16□□□□□ -0.46
TSPAN4-209ENST00000409543 C6orf48Q9UBA6 75 aa12.16□□□□□ -0.46
TSPAN4-209ENST00000409543 PAPPA-AS1Q5QFB9 102 aa12.15□□□□□ -0.46
TSPAN4-209ENST00000409543 FAM19A3Q7Z5A8 133 aa12.15□□□□□ -0.46
TSPAN4-209ENST00000409543 GNB1LQ9BYB4 327 aa12.15□□□□□ -0.46
TSPAN4-209ENST00000409543 SRSF9Q13242 221 aaKnown RBP eCLIP12.14□□□□□ -0.47
TSPAN4-209ENST00000409543 TOMM6Q96B49 74 aa12.14□□□□□ -0.47
TSPAN4-209ENST00000409543 C10orf91Q5T1B1 145 aa12.13□□□□□ -0.47
TSPAN4-209ENST00000409543 LINC01600Q96MT4 127 aa12.13□□□□□ -0.47
TSPAN4-209ENST00000409543 TIMM17AQ99595 171 aa12.13□□□□□ -0.47
TSPAN4-209ENST00000409543 TRBV30A0A0K0K1B3 111 aa12.12□□□□□ -0.47
TSPAN4-209ENST00000409543 COX19Q49B96 90 aa12.12□□□□□ -0.47
TSPAN4-209ENST00000409543 SEC11AP67812 179 aa12.11□□□□□ -0.47
TSPAN4-209ENST00000409543 C2orf82Q6UX34 121 aa12.11□□□□□ -0.47
TSPAN4-209ENST00000409543 ALKBH7Q9BT30 221 aaPredicted RBP12.11□□□□□ -0.47
TSPAN4-209ENST00000409543 PHF5AQ7RTV0 110 aaKnown RBP12.1□□□□□ -0.47
TSPAN4-209ENST00000409543 ERASQ7Z444 233 aa12.1□□□□□ -0.47
TSPAN4-209ENST00000409543 PLA2G2DQ9UNK4 145 aa12.1□□□□□ -0.47
TSPAN4-209ENST00000409543 LINC01546A6NGU7 62 aa12.09□□□□□ -0.47
TSPAN4-209ENST00000409543 HERVK_113P63121 156 aa12.09□□□□□ -0.47
TSPAN4-209ENST00000409543 RHEBQ15382 184 aa12.09□□□□□ -0.47
TSPAN4-209ENST00000409543 REG3GQ6UW15 175 aa12.09□□□□□ -0.47
TSPAN4-209ENST00000409543 PACRGQ96M98 296 aaPredicted RBP12.09□□□□□ -0.47
TSPAN4-209ENST00000409543 PSORS1C2Q9UIG4 136 aa12.09□□□□□ -0.47
TSPAN4-209ENST00000409543 CARHSP1Q9Y2V2 147 aaKnown RBP12.09□□□□□ -0.47
TSPAN4-209ENST00000409543 FAM168BA1KXE4 195 aa12.08□□□□□ -0.48
TSPAN4-209ENST00000409543 LINC01549A6NIU2 74 aa12.08□□□□□ -0.48
TSPAN4-209ENST00000409543 MT-ND6P03923 174 aa12.08□□□□□ -0.48
TSPAN4-209ENST00000409543 PRSS2P07478 247 aa12.08□□□□□ -0.48
TSPAN4-209ENST00000409543 GAGE2EQ4V326 116 aa12.08□□□□□ -0.48
TSPAN4-209ENST00000409543 SCGB3A1Q96QR1 104 aa12.08□□□□□ -0.48
TSPAN4-209ENST00000409543 GAGE2DQ9UEU5 116 aa12.08□□□□□ -0.48
TSPAN4-209ENST00000409543 NDUFC2-KCTD14E9PQ53 114 aa12.07□□□□□ -0.48
TSPAN4-209ENST00000409543 GEMIN7Q9H840 131 aaKnown RBP12.07□□□□□ -0.48
TSPAN4-209ENST00000409543 RPS10P5Q9NQ39 176 aa12.07□□□□□ -0.48
TSPAN4-209ENST00000409543 CDKN2A-AS1Q9UH64 79 aa12.07□□□□□ -0.48
TSPAN4-209ENST00000409543 CKS1BP61024 79 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms