RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 LOC100131303A0A0U1RQF7 123 aa9.92□□□□□ -0.82
SF3A1-201ENST00000215793 HCFC1P51610 2035 aa9.92□□□□□ -0.82
SF3A1-201ENST00000215793 C3orf84H3BNL1 204 aa9.91□□□□□ -0.82
SF3A1-201ENST00000215793 WFDC10BQ8IUB3 73 aa9.91□□□□□ -0.82
SF3A1-201ENST00000215793 CDC42SE2Q9NRR3 84 aa9.91□□□□□ -0.82
SF3A1-201ENST00000215793 FAM19A3Q7Z5A8 133 aa9.91□□□□□ -0.82
SF3A1-201ENST00000215793 SERP2Q8N6R1 65 aa9.91□□□□□ -0.82
SF3A1-201ENST00000215793 SMIM11BQ8TCY0 68 aa9.91□□□□□ -0.82
SF3A1-201ENST00000215793 C10orf142B7Z368 130 aa9.9□□□□□ -0.82
SF3A1-201ENST00000215793 C18orf65Q6ZTR6 163 aa9.9□□□□□ -0.82
SF3A1-201ENST00000215793 LINC00526Q96FQ7 95 aa9.9□□□□□ -0.82
SF3A1-201ENST00000215793 PRRC2AP48634 2157 aaKnown RBP9.9□□□□□ -0.82
SF3A1-201ENST00000215793 LOC107984640A0A0U1RRK4 108 aa9.9□□□□□ -0.82
SF3A1-201ENST00000215793 ZFYVE26Q68DK2 2539 aa9.9□□□□□ -0.82
SF3A1-201ENST00000215793 IGIPA6NJ69 53 aa9.9□□□□□ -0.83
SF3A1-201ENST00000215793 ATP5EP56381 51 aaPredicted RBP9.9□□□□□ -0.83
SF3A1-201ENST00000215793 ZNF73O43830 326 aaPredicted RBP9.89□□□□□ -0.83
SF3A1-201ENST00000215793 GAS8-AS1O95177 125 aa9.89□□□□□ -0.83
SF3A1-201ENST00000215793 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.89□□□□□ -0.83
SF3A1-201ENST00000215793 CLUHP3Q96NS8 147 aa9.89□□□□□ -0.83
SF3A1-201ENST00000215793 SPTSSBQ8NFR3 76 aa9.89□□□□□ -0.83
SF3A1-201ENST00000215793 NDUFC2-KCTD14E9PQ53 114 aa9.89□□□□□ -0.83
SF3A1-201ENST00000215793 ABCA12Q86UK0 2595 aa9.89□□□□□ -0.83
SF3A1-201ENST00000215793 POM121L12Q8N7R1 296 aa9.88□□□□□ -0.83
SF3A1-201ENST00000215793 MPLKIPQ8TAP9 179 aa9.88□□□□□ -0.83
SF3A1-201ENST00000215793 USP9XQ93008 2570 aaPredicted RBP9.88□□□□□ -0.83
SF3A1-201ENST00000215793 FAM240AA0A1B0GVK7 77 aa9.88□□□□□ -0.83
SF3A1-201ENST00000215793 V9GYY9 64 aa9.88□□□□□ -0.83
SF3A1-201ENST00000215793 K7ERS5 55 aa9.87□□□□□ -0.83
SF3A1-201ENST00000215793 TLN2Q9Y4G6 2542 aa9.87□□□□□ -0.83
SF3A1-201ENST00000215793 PRM2P04554 102 aa9.87□□□□□ -0.83
SF3A1-201ENST00000215793 CHCHD7Q9BUK0 85 aa9.87□□□□□ -0.83
SF3A1-201ENST00000215793 ARHGAP32A7KAX9 2087 aa9.86□□□□□ -0.83
SF3A1-201ENST00000215793 ODF3L2Q3SX64 289 aa9.86□□□□□ -0.83
SF3A1-201ENST00000215793 LINC00242Q5T6M2 205 aa9.86□□□□□ -0.83
SF3A1-201ENST00000215793 CRIP2P52943 208 aaPredicted RBP9.86□□□□□ -0.83
SF3A1-201ENST00000215793 IGLV2-18A0A075B6J9 118 aa9.86□□□□□ -0.83
SF3A1-201ENST00000215793 NDUFA7O95182 113 aa9.86□□□□□ -0.83
SF3A1-201ENST00000215793 PPDPFQ9H3Y8 114 aa9.86□□□□□ -0.83
SF3A1-201ENST00000215793 LINC00474Q9P2X8 69 aa9.86□□□□□ -0.83
SF3A1-201ENST00000215793 CYSRT1A8MQ03 144 aa9.85□□□□□ -0.83
SF3A1-201ENST00000215793 AVPP01185 164 aa9.85□□□□□ -0.83
SF3A1-201ENST00000215793 NUP210LQ5VU65 1888 aa9.84□□□□□ -0.83
SF3A1-201ENST00000215793 SPINK6Q6UWN8 80 aa9.84□□□□□ -0.83
SF3A1-201ENST00000215793 WFDC13Q8IUB5 93 aa9.84□□□□□ -0.83
SF3A1-201ENST00000215793 IGHV4-30-4P0DP06 118 aa9.83□□□□□ -0.84
SF3A1-201ENST00000215793 PRR15LQ9BU68 103 aa9.83□□□□□ -0.84
SF3A1-201ENST00000215793 EGFEM1PQ0D2K5 195 aa9.83□□□□□ -0.84
SF3A1-201ENST00000215793 CDSNQ15517 529 aa9.83□□□□□ -0.84
SF3A1-201ENST00000215793 BRI3O95415 125 aa9.83□□□□□ -0.84
SF3A1-201ENST00000215793 MRPL55Q7Z7F7 128 aaKnown RBP9.82□□□□□ -0.84
SF3A1-201ENST00000215793 Q8N9L7 120 aa9.82□□□□□ -0.84
SF3A1-201ENST00000215793 COX7CP15954 63 aa9.82□□□□□ -0.84
SF3A1-201ENST00000215793 NTM-AS1Q6ZSK4 140 aa9.82□□□□□ -0.84
SF3A1-201ENST00000215793 RPL37AP8A6NKH3 93 aa9.82□□□□□ -0.84
SF3A1-201ENST00000215793 LINC00310P59036 64 aa9.82□□□□□ -0.84
SF3A1-201ENST00000215793 Q6JHZ5 121 aa9.81□□□□□ -0.84
SF3A1-201ENST00000215793 SMIM1B2RUZ4 78 aa9.81□□□□□ -0.84
SF3A1-201ENST00000215793 IGLV1-51P01701 117 aa9.81□□□□□ -0.84
SF3A1-201ENST00000215793 COX8CQ7Z4L0 72 aa9.81□□□□□ -0.84
SF3A1-201ENST00000215793 ZNF580Q9UK33 172 aa9.81□□□□□ -0.84
SF3A1-201ENST00000215793 URB1-AS1Q96HZ7 61 aa9.8□□□□□ -0.84
SF3A1-201ENST00000215793 FN1P02751 2386 aaKnown RBP9.8□□□□□ -0.84
SF3A1-201ENST00000215793 SETD2Q9BYW2 2564 aaPredicted RBP9.8□□□□□ -0.84
SF3A1-201ENST00000215793 COL4A4P53420 1690 aaPredicted RBP9.8□□□□□ -0.84
SF3A1-201ENST00000215793 XGP55808 180 aa9.8□□□□□ -0.84
SF3A1-201ENST00000215793 NANOS2P60321 138 aaKnown RBP9.8□□□□□ -0.84
SF3A1-201ENST00000215793 OXLD1Q5BKU9 147 aa9.8□□□□□ -0.84
SF3A1-201ENST00000215793 A0A0J9YWU9 116 aa9.79□□□□□ -0.84
SF3A1-201ENST00000215793 UNQ6190/PRO20217Q6UXQ8 127 aa9.79□□□□□ -0.84
SF3A1-201ENST00000215793 PLAC8L1A1L4L8 177 aa9.79□□□□□ -0.84
SF3A1-201ENST00000215793 M0R2N4 97 aa9.79□□□□□ -0.84
SF3A1-201ENST00000215793 CSDC2Q9Y534 153 aaKnown RBP9.79□□□□□ -0.84
SF3A1-201ENST00000215793 SNURFQ9Y675 71 aa9.79□□□□□ -0.84
SF3A1-201ENST00000215793 RPL28P46779 137 aaKnown RBP9.78□□□□□ -0.84
SF3A1-201ENST00000215793 USP9YO00507 2555 aaPredicted RBP9.78□□□□□ -0.84
SF3A1-201ENST00000215793 Q6Q795 121 aa9.77□□□□□ -0.85
SF3A1-201ENST00000215793 MUC22E2RYF6 1773 aaPredicted RBP9.77□□□□□ -0.85
SF3A1-201ENST00000215793 EDN2P20800 178 aa9.76□□□□□ -0.85
SF3A1-201ENST00000215793 IGLV9-49A0A0B4J1Y8 123 aa9.75□□□□□ -0.85
SF3A1-201ENST00000215793 Q8N814 137 aa9.75□□□□□ -0.85
SF3A1-201ENST00000215793 AMELXQ99217 191 aa9.75□□□□□ -0.85
SF3A1-201ENST00000215793 CEP192Q8TEP8 1941 aa9.75□□□□□ -0.85
SF3A1-201ENST00000215793 LY6G6CO95867 125 aa9.75□□□□□ -0.85
SF3A1-201ENST00000215793 C10orf25Q5T742 122 aa9.75□□□□□ -0.85
SF3A1-201ENST00000215793 HRCT1Q6UXD1 115 aa9.75□□□□□ -0.85
SF3A1-201ENST00000215793 TRBV10-3A0A0K0K1G6 114 aa9.74□□□□□ -0.85
SF3A1-201ENST00000215793 PLA2G2AP14555 144 aa9.74□□□□□ -0.85
SF3A1-201ENST00000215793 M0QXV9 152 aa9.74□□□□□ -0.85
SF3A1-201ENST00000215793 SERP1Q9Y6X1 66 aa9.74□□□□□ -0.85
SF3A1-201ENST00000215793 CEP295Q9C0D2 2601 aa9.74□□□□□ -0.85
SF3A1-201ENST00000215793 PKD1L2Q7Z442 2459 aa9.73□□□□□ -0.85
SF3A1-201ENST00000215793 IGLV4-60A0A075B6I1 120 aa9.73□□□□□ -0.85
SF3A1-201ENST00000215793 FHL2Q14192 279 aa9.73□□□□□ -0.85
SF3A1-201ENST00000215793 BEAN1Q3B7T3 259 aa9.73□□□□□ -0.85
SF3A1-201ENST00000215793 C1orf137Q5JT78 98 aa9.73□□□□□ -0.85
SF3A1-201ENST00000215793 CHD8Q9HCK8 2581 aa9.72□□□□□ -0.85
SF3A1-201ENST00000215793 PRR4Q16378 134 aa9.72□□□□□ -0.85
SF3A1-201ENST00000215793 ATG2AQ2TAZ0 1938 aa9.72□□□□□ -0.85
SF3A1-201ENST00000215793 LINC00694P0DN24 101 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms