RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 C2orf88Q9BSF0 95 aa12.13□□□□□ -0.47
PHGDH-234ENST00000642041 MRPS16Q9Y3D3 137 aaKnown RBP12.13□□□□□ -0.47
PHGDH-234ENST00000642041 DYNC1H1Q14204 4646 aaKnown RBP12.12□□□□□ -0.47
PHGDH-234ENST00000642041 PRSS29PA6NIE9 313 aa12.12□□□□□ -0.47
PHGDH-234ENST00000642041 P0DMU3 169 aa12.12□□□□□ -0.47
PHGDH-234ENST00000642041 FAM231AP0DMU4 169 aa12.12□□□□□ -0.47
PHGDH-234ENST00000642041 FAM231CP0DMU5 169 aa12.12□□□□□ -0.47
PHGDH-234ENST00000642041 ZNF25P17030 456 aaPredicted RBP12.12□□□□□ -0.47
PHGDH-234ENST00000642041 EMP1P54849 157 aa12.12□□□□□ -0.47
PHGDH-234ENST00000642041 FAM222AQ5U5X8 452 aa12.12□□□□□ -0.47
PHGDH-234ENST00000642041 CST9LQ9H4G1 147 aa12.12□□□□□ -0.47
PHGDH-234ENST00000642041 TRBV25-1A0A075B6N4 114 aa12.11□□□□□ -0.47
PHGDH-234ENST00000642041 IGHV4-28A0A0C4DH34 117 aa12.11□□□□□ -0.47
PHGDH-234ENST00000642041 DEFB130BP0DP73 79 aa12.11□□□□□ -0.47
PHGDH-234ENST00000642041 DEFB130AP0DP74 79 aa12.11□□□□□ -0.47
PHGDH-234ENST00000642041 COX8AP10176 69 aa12.11□□□□□ -0.47
PHGDH-234ENST00000642041 ATOH7Q8N100 152 aa12.11□□□□□ -0.47
PHGDH-234ENST00000642041 Q8NAQ8 132 aa12.11□□□□□ -0.47
PHGDH-234ENST00000642041 C11orf68Q9H3H3 251 aaKnown RBP12.11□□□□□ -0.47
PHGDH-234ENST00000642041 MRPL35Q9NZE8 188 aaKnown RBP12.11□□□□□ -0.47
PHGDH-234ENST00000642041 TRAV26-1A0A087WT03 109 aa12.1□□□□□ -0.47
PHGDH-234ENST00000642041 UBE2L6O14933 153 aa12.1□□□□□ -0.47
PHGDH-234ENST00000642041 NEGR1Q7Z3B1 354 aa12.1□□□□□ -0.47
PHGDH-234ENST00000642041 TMEM101Q96IK0 257 aa12.1□□□□□ -0.47
PHGDH-234ENST00000642041 HNRNPA3P51991 378 aaKnown RBP12.09□□□□□ -0.47
PHGDH-234ENST00000642041 NFE4Q86UQ8 179 aa12.09□□□□□ -0.47
PHGDH-234ENST00000642041 TMEM243Q9BU79 118 aa12.09□□□□□ -0.47
PHGDH-234ENST00000642041 CHCHD7Q9BUK0 85 aa12.09□□□□□ -0.47
PHGDH-234ENST00000642041 DNAH6Q9C0G6 4158 aa12.08□□□□□ -0.48
PHGDH-234ENST00000642041 NUPR2A6NF83 97 aa12.08□□□□□ -0.48
PHGDH-234ENST00000642041 H3BNG1 76 aa12.08□□□□□ -0.48
PHGDH-234ENST00000642041 ZC2HC1BQ5TFG8 222 aa12.08□□□□□ -0.48
PHGDH-234ENST00000642041 BOD1L2Q8IYS8 172 aa12.08□□□□□ -0.48
PHGDH-234ENST00000642041 AMELXQ99217 191 aa12.08□□□□□ -0.48
PHGDH-234ENST00000642041 HERC1Q15751 4861 aa12.08□□□□□ -0.48
PHGDH-234ENST00000642041 hDV102S1A0JD36 115 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 GAGE12JA6NER3 117 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 C11orf86A6NJI1 115 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 M0R143 59 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 PAX4O43316 350 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 RPL39P62891 51 aaKnown RBP12.07□□□□□ -0.48
PHGDH-234ENST00000642041 GAGE1Q13065 139 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 GAGE4Q13068 117 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 GAGE5Q13069 117 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 GAGE13Q4V321 117 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 KRTAP4-5Q9BYR2 181 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 UBE2D4Q9Y2X8 147 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 DNAH11Q96DT5 4516 aa12.07□□□□□ -0.48
PHGDH-234ENST00000642041 IGLV4-3A0A075B6K6 122 aa12.06□□□□□ -0.48
PHGDH-234ENST00000642041 ATP6V0E2Q8NHE4 81 aa12.06□□□□□ -0.48
PHGDH-234ENST00000642041 FAT2Q9NYQ8 4349 aa12.06□□□□□ -0.48
PHGDH-234ENST00000642041 LINC00587B1AMM8 73 aa12.05□□□□□ -0.48
PHGDH-234ENST00000642041 CCL25O15444 150 aa12.05□□□□□ -0.48
PHGDH-234ENST00000642041 MRPL23Q16540 153 aaKnown RBP12.05□□□□□ -0.48
PHGDH-234ENST00000642041 AMMECR1LQ6DCA0 310 aa12.05□□□□□ -0.48
PHGDH-234ENST00000642041 PHLDA1Q8WV24 401 aaPredicted RBP12.05□□□□□ -0.48
PHGDH-234ENST00000642041 TRBV6-8A0A0A6YYG3 113 aa12.04□□□□□ -0.48
PHGDH-234ENST00000642041 E9PLD3 99 aa12.04□□□□□ -0.48
PHGDH-234ENST00000642041 LINC00694P0DN24 101 aa12.04□□□□□ -0.48
PHGDH-234ENST00000642041 CEMP1Q6PRD7 247 aaPredicted RBP12.04□□□□□ -0.48
PHGDH-234ENST00000642041 C14orf144Q96I85 54 aa12.04□□□□□ -0.48
PHGDH-234ENST00000642041 DNAH2Q9P225 4427 aa12.04□□□□□ -0.48
PHGDH-234ENST00000642041 OR5A1Q8NGJ0 315 aa12.03□□□□□ -0.48
PHGDH-234ENST00000642041 HIGD1BQ9P298 99 aa12.03□□□□□ -0.48
PHGDH-234ENST00000642041 TINCRA0A1B0GVN0 87 aa12.02□□□□□ -0.49
PHGDH-234ENST00000642041 H3BRM9 83 aa12.02□□□□□ -0.49
PHGDH-234ENST00000642041 GYPEP15421 78 aa12.02□□□□□ -0.49
PHGDH-234ENST00000642041 TIRAPP58753 221 aa12.02□□□□□ -0.49
PHGDH-234ENST00000642041 KLK5Q9Y337 293 aaPredicted RBP12.02□□□□□ -0.49
PHGDH-234ENST00000642041 FGF6P10767 208 aa12.01□□□□□ -0.49
PHGDH-234ENST00000642041 MAJINQ3KP22 176 aa12.01□□□□□ -0.49
PHGDH-234ENST00000642041 FAM19A3Q7Z5A8 133 aa12.01□□□□□ -0.49
PHGDH-234ENST00000642041 STPG4Q8N801 248 aa12.01□□□□□ -0.49
PHGDH-234ENST00000642041 DNAH17Q9UFH2 4485 aa12.01□□□□□ -0.49
PHGDH-234ENST00000642041 IGHV3-38A0A0C4DH36 116 aa12□□□□□ -0.49
PHGDH-234ENST00000642041 A0A1B0GUV1 79 aa12□□□□□ -0.49
PHGDH-234ENST00000642041 NMUP48645 174 aa12□□□□□ -0.49
PHGDH-234ENST00000642041 HERVK_113P63121 156 aa12□□□□□ -0.49
PHGDH-234ENST00000642041 PLEKHB2Q96CS7 222 aa12□□□□□ -0.49
PHGDH-234ENST00000642041 ICOSQ9Y6W8 199 aa12□□□□□ -0.49
PHGDH-234ENST00000642041 ANKRD39Q53RE8 183 aa11.99□□□□□ -0.49
PHGDH-234ENST00000642041 GEMIN7Q9H840 131 aaKnown RBP11.99□□□□□ -0.49
PHGDH-234ENST00000642041 IGLV4-69A0A075B6H9 119 aa11.98□□□□□ -0.49
PHGDH-234ENST00000642041 TAL2Q16559 108 aa11.98□□□□□ -0.49
PHGDH-234ENST00000642041 TMEM170BQ5T4T1 132 aa11.98□□□□□ -0.49
PHGDH-234ENST00000642041 NTM-AS1Q6ZSK4 140 aa11.98□□□□□ -0.49
PHGDH-234ENST00000642041 CHAC1Q9BUX1 264 aa11.98□□□□□ -0.49
PHGDH-234ENST00000642041 HSPG2P98160 4391 aa11.97□□□□□ -0.49
PHGDH-234ENST00000642041 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.97□□□□□ -0.49
PHGDH-234ENST00000642041 IGKV2-29A2NJV5 120 aaPredicted RBP11.97□□□□□ -0.49
PHGDH-234ENST00000642041 F5H768 121 aa11.97□□□□□ -0.49
PHGDH-234ENST00000642041 CTAG1AP78358 180 aa11.97□□□□□ -0.49
PHGDH-234ENST00000642041 CDC42SE2Q9NRR3 84 aa11.97□□□□□ -0.49
PHGDH-234ENST00000642041 Q9UF83 564 aa11.97□□□□□ -0.49
PHGDH-234ENST00000642041 A0A1B0GVY2 172 aa11.96□□□□□ -0.49
PHGDH-234ENST00000642041 LINC00336Q6ZUF6 198 aa11.96□□□□□ -0.49
PHGDH-234ENST00000642041 CHCHD5Q9BSY4 110 aa11.96□□□□□ -0.49
PHGDH-234ENST00000642041 LEPROTO15243 131 aa11.95□□□□□ -0.5
PHGDH-234ENST00000642041 MYMXA0A1B0GTQ4 84 aa11.94□□□□□ -0.5
PHGDH-234ENST00000642041 DEFB4AO15263 64 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms