RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NPVFQ9HCQ7 196 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 GINS2Q9Y248 185 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 IQSEC2Q5JU85 1478 aa-0.43□□□□□ -2.48
VPS35-212ENST00000640313 MYH9P35579 1960 aaKnown RBP-0.43□□□□□ -2.48
VPS35-212ENST00000640313 IFT172Q9UG01 1749 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 ADGRB1O14514 1584 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 ERCC6L2Q5T890 1561 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 SIPA1L3O60292 1781 aaPredicted RBP-0.44□□□□□ -2.48
VPS35-212ENST00000640313 A0A1B0GV72 72 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 SPAARA0A1B0GVQ0 90 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 H0YJX3 145 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 PPP1R17O96001 155 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 LINC00694P0DN24 101 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 S100GP29377 79 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 RRAS2P62070 204 aaPredicted RBP-0.44□□□□□ -2.48
VPS35-212ENST00000640313 HIST1H1AQ02539 215 aaPredicted RBP-0.44□□□□□ -2.48
VPS35-212ENST00000640313 Q6AWC8 147 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 Q6JHZ5 121 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 Q6ZUT4 128 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 SMIM4Q8WVI0 70 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 SKA2Q8WVK7 121 aaPredicted RBP-0.44□□□□□ -2.48
VPS35-212ENST00000640313 MAGOHBQ96A72 148 aaKnown RBP-0.44□□□□□ -2.48
VPS35-212ENST00000640313 AIF1LQ9BQI0 150 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 R4GMQ9 66 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 MRC1P22897 1456 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 PXDNQ92626 1479 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 IFT140Q96RY7 1462 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 WDR7Q9Y4E6 1490 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 PI4KAP42356 2102 aa-0.44□□□□□ -2.48
VPS35-212ENST00000640313 TMEM2Q9UHN6 1383 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 KDM3BQ7LBC6 1761 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 ARFGEF1Q9Y6D6 1849 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 PAPPAQ13219 1627 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 NSD3Q9BZ95 1437 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 GAPVD1Q14C86 1478 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 CTXND1A0A1B0GTU2 59 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 A6NIN4 97 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 NDUFB6O95139 128 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 IL5P05113 134 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 SMIM6P0DI80 62 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 S100A3P33764 101 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 NCS1P62166 190 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 DEFB135Q30KP9 77 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 S100A7L2Q5SY68 101 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 TMEM170BQ5T4T1 132 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 RPL7L1Q6DKI1 246 aaKnown RBP-0.45□□□□□ -2.48
VPS35-212ENST00000640313 DEFB105AQ8NG35 78 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 SPRR4Q96PI1 79 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 MRPL40Q9NQ50 206 aaKnown RBP-0.45□□□□□ -2.48
VPS35-212ENST00000640313 HSPB11Q9Y547 144 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 LENEPQ9Y5L5 61 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 LINC01558Q9Y6Z2 57 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 NBEAL2Q6ZNJ1 2754 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 TULP4Q9NRJ4 1543 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 KDM5CP41229 1560 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 XIRP1Q702N8 1843 aaKnown RBP-0.45□□□□□ -2.48
VPS35-212ENST00000640313 WNK3Q9BYP7 1800 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 ZNF236Q9UL36 1845 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 MGAM2Q2M2H8 2515 aa-0.45□□□□□ -2.48
VPS35-212ENST00000640313 LRRC37A3O60309 1634 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 DAPK1P53355 1430 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 PRG4Q92954 1404 aaPredicted RBP-0.46□□□□□ -2.48
VPS35-212ENST00000640313 TRAV13-2A0A0B4J235 113 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 LINC00959A0A1B0GUT2 108 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 IGLC7A0M8Q6 106 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 F8VRH5 84 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 TSTD3H0UI37 97 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 UQCR11O14957 56 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 NCR2O95944 276 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 TNFP01375 233 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 DBIP07108 87 aaKnown RBP-0.46□□□□□ -2.48
VPS35-212ENST00000640313 PIPP12273 146 aaPredicted RBP-0.46□□□□□ -2.48
VPS35-212ENST00000640313 COX17Q14061 63 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 DEFB112Q30KQ8 113 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 CCDC153Q494R4 210 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 C10orf128Q5T292 105 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 SCIMPQ6UWF3 145 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 BAGE2Q86Y30 109 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 MMGT1Q8N4V1 131 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 Q8N8P6 123 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 LSM10Q969L4 123 aaKnown RBP-0.46□□□□□ -2.48
VPS35-212ENST00000640313 SPTSSAQ969W0 71 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 DPH3Q96FX2 82 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 SEC11CQ9BY50 192 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 NDUFA4L2Q9NRX3 87 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 SPANXCQ9NY87 97 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 NIPBLQ6KC79 2804 aaeCLIP-0.46□□□□□ -2.48
VPS35-212ENST00000640313 GCN1Q92616 2671 aaKnown RBP-0.46□□□□□ -2.48
VPS35-212ENST00000640313 DOCK1Q14185 1865 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 FRYQ5TBA9 3013 aa-0.46□□□□□ -2.48
VPS35-212ENST00000640313 OVOS2A0A0J9YW53 1432 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 DISP2A7MBM2 1401 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 OVOS2Q6IE36 1432 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 LRRC37A2A6NM11 1700 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 ZNF518AQ6AHZ1 1483 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 TRBV7-4A0A0J9YYF1 115 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 SNCGO76070 127 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 GUCA1AP43080 201 aaPredicted RBP-0.47□□□□□ -2.48
VPS35-212ENST00000640313 C10orf113Q5VZT2 155 aa-0.47□□□□□ -2.48
VPS35-212ENST00000640313 SMIM15Q7Z3B0 74 aa-0.47□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms