RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 HIGD2BQ4VC39 106 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 MRPL52Q86TS9 123 aaKnown RBP7.54□□□□□ -1.2
UPF3B-204ENST00000619445 SMIM7Q9BQ49 75 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 TRBV27A0A0K0K1C4 114 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 LINC00959A0A1B0GUT2 108 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 C7orf77A4D0Y5 90 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 HIGD1CA8MV81 97 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 XCL1P47992 114 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 CEBPGP53567 150 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 ALKAL2Q6UX46 152 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 ISOC2Q96AB3 205 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 EIF5A2Q9GZV4 153 aaKnown RBP7.53□□□□□ -1.2
UPF3B-204ENST00000619445 OSTCQ9NRP0 149 aa7.53□□□□□ -1.2
UPF3B-204ENST00000619445 IGKV2-24A0A0C4DH68 120 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 ZNF561-AS1K7EIQ3 104 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 VCYO14598 125 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 PHOX2AO14813 284 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 TSHBP01222 138 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 POLR2KP53803 58 aaKnown RBP7.52□□□□□ -1.21
UPF3B-204ENST00000619445 RIGQ13278 110 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 CD164L2Q6UWJ8 174 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 LINC01551Q86U37 167 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 STPG4Q8N801 248 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 PRSS3P2Q8NHM4 247 aa7.52□□□□□ -1.21
UPF3B-204ENST00000619445 ZNF727A8MUV8 499 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 C1orf196B1AJZ1 125 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 PPP1R2P9O14990 202 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 MT1HL1P0DM35 61 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 FCER1GP30273 86 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 ZNF664Q8N3J9 261 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 CARD19Q96LW7 228 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 KIR2DL4Q99706 377 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 CDC42SE2Q9NRR3 84 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 TMEM242Q9NWH2 141 aa7.51□□□□□ -1.21
UPF3B-204ENST00000619445 CSDC2Q9Y534 153 aaKnown RBP7.51□□□□□ -1.21
UPF3B-204ENST00000619445 LCE2BO14633 110 aa7.5□□□□□ -1.21
UPF3B-204ENST00000619445 TCAPO15273 167 aa7.5□□□□□ -1.21
UPF3B-204ENST00000619445 PRR3P79522 188 aaKnown RBP7.5□□□□□ -1.21
UPF3B-204ENST00000619445 TMEM18Q96B42 140 aa7.5□□□□□ -1.21
UPF3B-204ENST00000619445 GHRHP01286 108 aa7.49□□□□□ -1.21
UPF3B-204ENST00000619445 RAB4AP20338 218 aa7.49□□□□□ -1.21
UPF3B-204ENST00000619445 SYCNQ0VAF6 134 aa7.49□□□□□ -1.21
UPF3B-204ENST00000619445 FAM74A3Q4VXF1 159 aa7.49□□□□□ -1.21
UPF3B-204ENST00000619445 A0A096LNI7 61 aa7.48□□□□□ -1.21
UPF3B-204ENST00000619445 A0A1B0GW15 77 aa7.48□□□□□ -1.21
UPF3B-204ENST00000619445 MALP21145 153 aa7.48□□□□□ -1.21
UPF3B-204ENST00000619445 SUMO2P61956 95 aaKnown RBP7.48□□□□□ -1.21
UPF3B-204ENST00000619445 REG3GQ6UW15 175 aa7.48□□□□□ -1.21
UPF3B-204ENST00000619445 NAT8BQ9UHF3 227 aa7.48□□□□□ -1.21
UPF3B-204ENST00000619445 LINC00862A6NCI5 91 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 COX7A2LO14548 114 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 APOMO95445 188 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 CAMPP49913 170 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 SPINK6Q6UWN8 80 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 Q6ZRP5 223 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 AMN1Q8IY45 258 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 LINC01600Q96MT4 127 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 TIMM21Q9BVV7 248 aa7.47□□□□□ -1.21
UPF3B-204ENST00000619445 LOC107984640A0A0U1RRK4 108 aa7.46□□□□□ -1.21
UPF3B-204ENST00000619445 TMEM241Q24JQ0 296 aa7.46□□□□□ -1.21
UPF3B-204ENST00000619445 V9GYV3 84 aa7.46□□□□□ -1.21
UPF3B-204ENST00000619445 UBR4Q5T4S7 5183 aa7.46□□□□□ -1.22
UPF3B-204ENST00000619445 IGLV4-69A0A075B6H9 119 aa7.46□□□□□ -1.22
UPF3B-204ENST00000619445 GAS8-AS1O95177 125 aa7.46□□□□□ -1.22
UPF3B-204ENST00000619445 S100A8P05109 93 aa7.46□□□□□ -1.22
UPF3B-204ENST00000619445 SRP19P09132 144 aaKnown RBP7.46□□□□□ -1.22
UPF3B-204ENST00000619445 RPL32P62910 135 aaKnown RBP7.46□□□□□ -1.22
UPF3B-204ENST00000619445 NUP35Q8NFH5 326 aa7.46□□□□□ -1.22
UPF3B-204ENST00000619445 C2orf48Q96LS8 159 aa7.46□□□□□ -1.22
UPF3B-204ENST00000619445 C20orf78Q9BR46 151 aa7.46□□□□□ -1.22
UPF3B-204ENST00000619445 F8WDY8 70 aa7.45□□□□□ -1.22
UPF3B-204ENST00000619445 PTTG1IPP53801 180 aa7.45□□□□□ -1.22
UPF3B-204ENST00000619445 FAM104BQ5XKR9 115 aa7.45□□□□□ -1.22
UPF3B-204ENST00000619445 NRACQ8N912 160 aa7.45□□□□□ -1.22
UPF3B-204ENST00000619445 CAMK2N2Q96S95 79 aa7.45□□□□□ -1.22
UPF3B-204ENST00000619445 SMDT1Q9H4I9 107 aa7.45□□□□□ -1.22
UPF3B-204ENST00000619445 UBE2D4Q9Y2X8 147 aa7.45□□□□□ -1.22
UPF3B-204ENST00000619445 TRBV24-1A0A075B6N3 115 aa7.44□□□□□ -1.22
UPF3B-204ENST00000619445 NAT8Q9UHE5 227 aa7.44□□□□□ -1.22
UPF3B-204ENST00000619445 TMA7Q9Y2S6 64 aaKnown RBP7.44□□□□□ -1.22
UPF3B-204ENST00000619445 A0A0J9YXV3 536 aa7.43□□□□□ -1.22
UPF3B-204ENST00000619445 F8W036 122 aa7.43□□□□□ -1.22
UPF3B-204ENST00000619445 RNF151Q2KHN1 245 aa7.43□□□□□ -1.22
UPF3B-204ENST00000619445 OR10D4PQ8NGN7 298 aa7.43□□□□□ -1.22
UPF3B-204ENST00000619445 LINC00526Q96FQ7 95 aa7.43□□□□□ -1.22
UPF3B-204ENST00000619445 hCG_2014768A0A024R1R8 64 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 TRAV13-1A0A0B4J241 112 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 SMIM27A0A1W2PRY6 76 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 SMKR1H3BMG3 65 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 PPBPP02775 128 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 CKS2P33552 79 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 RPL23P62829 140 aaKnown RBP7.42□□□□□ -1.22
UPF3B-204ENST00000619445 GAGE2BQ13066 116 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 PEA15Q15121 130 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 ADIRFQ15847 76 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 MRPL51Q4U2R6 128 aaKnown RBP7.42□□□□□ -1.22
UPF3B-204ENST00000619445 SPANXA1Q9NS26 97 aa7.42□□□□□ -1.22
UPF3B-204ENST00000619445 SPAG11BQ08648 103 aa7.4□□□□□ -1.22
UPF3B-204ENST00000619445 SRSF9Q13242 221 aaKnown RBP eCLIP7.4□□□□□ -1.22
UPF3B-204ENST00000619445 Q6ZUT4 128 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 149.8 ms