RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 TNXBP22105 4242 aa9.81□□□□□ -0.84
SHKBP1-228ENST00000602239 IGHV1-58A0A0C4DH39 117 aa9.8□□□□□ -0.84
SHKBP1-228ENST00000602239 RAB4AP20338 218 aa9.8□□□□□ -0.84
SHKBP1-228ENST00000602239 BLOC1S1P78537 153 aa9.8□□□□□ -0.84
SHKBP1-228ENST00000602239 MRPL52Q86TS9 123 aaKnown RBP9.8□□□□□ -0.84
SHKBP1-228ENST00000602239 MRAP2Q96G30 205 aa9.8□□□□□ -0.84
SHKBP1-228ENST00000602239 TMEM191AQ9H0A3 160 aa9.8□□□□□ -0.84
SHKBP1-228ENST00000602239 A0A1B0GUT8 65 aa9.79□□□□□ -0.84
SHKBP1-228ENST00000602239 HIGD1CA8MV81 97 aa9.79□□□□□ -0.84
SHKBP1-228ENST00000602239 SS18Q15532 418 aa9.79□□□□□ -0.84
SHKBP1-228ENST00000602239 CT83Q5H943 113 aa9.79□□□□□ -0.84
SHKBP1-228ENST00000602239 AMN1Q8IY45 258 aa9.79□□□□□ -0.84
SHKBP1-228ENST00000602239 ZNF664Q8N3J9 261 aa9.79□□□□□ -0.84
SHKBP1-228ENST00000602239 CARD19Q96LW7 228 aa9.79□□□□□ -0.84
SHKBP1-228ENST00000602239 TRBV27A0A0K0K1C4 114 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 SMKR1H3BMG3 65 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 SYCNQ0VAF6 134 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 CD164L2Q6UWJ8 174 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 LINC01551Q86U37 167 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 TSKUQ8WUA8 353 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 BORCS7Q96B45 105 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 LINC00474Q9P2X8 69 aa9.78□□□□□ -0.84
SHKBP1-228ENST00000602239 KRTAP10-8P60410 259 aa9.77□□□□□ -0.85
SHKBP1-228ENST00000602239 SRSF9Q13242 221 aaKnown RBP eCLIP9.77□□□□□ -0.85
SHKBP1-228ENST00000602239 SMIM7Q9BQ49 75 aa9.77□□□□□ -0.85
SHKBP1-228ENST00000602239 LRP2P98164 4655 aa9.76□□□□□ -0.85
SHKBP1-228ENST00000602239 C7orf77A4D0Y5 90 aa9.76□□□□□ -0.85
SHKBP1-228ENST00000602239 ZNF561-AS1K7EIQ3 104 aa9.76□□□□□ -0.85
SHKBP1-228ENST00000602239 IGLV4-69A0A075B6H9 119 aa9.75□□□□□ -0.85
SHKBP1-228ENST00000602239 A0A0J9YXV3 536 aa9.75□□□□□ -0.85
SHKBP1-228ENST00000602239 RNASE13Q5GAN3 156 aaKnown RBP9.75□□□□□ -0.85
SHKBP1-228ENST00000602239 SPINK6Q6UWN8 80 aa9.75□□□□□ -0.85
SHKBP1-228ENST00000602239 FAM210AQ96ND0 272 aa9.75□□□□□ -0.85
SHKBP1-228ENST00000602239 EIF5A2Q9GZV4 153 aaKnown RBP9.75□□□□□ -0.85
SHKBP1-228ENST00000602239 OSTCQ9NRP0 149 aa9.75□□□□□ -0.85
SHKBP1-228ENST00000602239 A0A1W2PNN7 141 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 ZNF727A8MUV8 499 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 VCYO14598 125 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 CAMPP49913 170 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 PTTG1IPP53801 180 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 GAGE2BQ13066 116 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 NRACQ8N912 160 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 V9GYV3 84 aa9.74□□□□□ -0.85
SHKBP1-228ENST00000602239 C1orf196B1AJZ1 125 aa9.73□□□□□ -0.85
SHKBP1-228ENST00000602239 SRP19P09132 144 aaKnown RBP9.73□□□□□ -0.85
SHKBP1-228ENST00000602239 Q6ZRP5 223 aa9.73□□□□□ -0.85
SHKBP1-228ENST00000602239 NUP35Q8NFH5 326 aa9.73□□□□□ -0.85
SHKBP1-228ENST00000602239 UBE2D4Q9Y2X8 147 aa9.73□□□□□ -0.85
SHKBP1-228ENST00000602239 TRAV13-1A0A0B4J241 112 aa9.72□□□□□ -0.85
SHKBP1-228ENST00000602239 FCER1GP30273 86 aa9.72□□□□□ -0.85
SHKBP1-228ENST00000602239 AKAP14Q86UN6 197 aa9.72□□□□□ -0.85
SHKBP1-228ENST00000602239 PKIGQ9Y2B9 76 aa9.72□□□□□ -0.85
SHKBP1-228ENST00000602239 CSDC2Q9Y534 153 aaKnown RBP9.72□□□□□ -0.85
SHKBP1-228ENST00000602239 hCG_2014768A0A024R1R8 64 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 LOC107984640A0A0U1RRK4 108 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 COX7A2LO14548 114 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 MALP21145 153 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 SUMO2P61956 95 aaKnown RBP9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 RIGQ13278 110 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 REG3GQ6UW15 175 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 C5orf38Q86SI9 138 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 RNF213Q63HN8 5207 aa9.71□□□□□ -0.86
SHKBP1-228ENST00000602239 MRPL51Q4U2R6 128 aaKnown RBP9.7□□□□□ -0.86
SHKBP1-228ENST00000602239 Q6ZUT4 128 aa9.7□□□□□ -0.86
SHKBP1-228ENST00000602239 ISOC2Q96AB3 205 aa9.7□□□□□ -0.86
SHKBP1-228ENST00000602239 CAMK2N2Q96S95 79 aa9.7□□□□□ -0.86
SHKBP1-228ENST00000602239 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.69□□□□□ -0.86
SHKBP1-228ENST00000602239 KIR2DL4Q99706 377 aa9.69□□□□□ -0.86
SHKBP1-228ENST00000602239 OPRPNQ99935 248 aaPredicted RBP9.69□□□□□ -0.86
SHKBP1-228ENST00000602239 APOMO95445 188 aa9.68□□□□□ -0.86
SHKBP1-228ENST00000602239 TMEM241Q24JQ0 296 aa9.68□□□□□ -0.86
SHKBP1-228ENST00000602239 C9orf116Q5BN46 136 aaPredicted RBP9.68□□□□□ -0.86
SHKBP1-228ENST00000602239 FAM104AQ969W3 186 aa9.68□□□□□ -0.86
SHKBP1-228ENST00000602239 C9JQL5 133 aa9.67□□□□□ -0.86
SHKBP1-228ENST00000602239 PPP1R17O96001 155 aa9.67□□□□□ -0.86
SHKBP1-228ENST00000602239 RPL23P62829 140 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-228ENST00000602239 FAM104BQ5XKR9 115 aa9.67□□□□□ -0.86
SHKBP1-228ENST00000602239 NAT8BQ9UHF3 227 aa9.67□□□□□ -0.86
SHKBP1-228ENST00000602239 RPL39P62891 51 aaKnown RBP9.66□□□□□ -0.86
SHKBP1-228ENST00000602239 C2orf48Q96LS8 159 aa9.66□□□□□ -0.86
SHKBP1-228ENST00000602239 TIMM21Q9BVV7 248 aa9.66□□□□□ -0.86
SHKBP1-228ENST00000602239 PSORS1C2Q9UIG4 136 aa9.66□□□□□ -0.86
SHKBP1-228ENST00000602239 RPL18AQ02543 176 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-228ENST00000602239 FAM74A3Q4VXF1 159 aa9.65□□□□□ -0.86
SHKBP1-228ENST00000602239 PHF5AQ7RTV0 110 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-228ENST00000602239 SMIM27A0A1W2PRY6 76 aa9.64□□□□□ -0.87
SHKBP1-228ENST00000602239 PPP1R2P9O14990 202 aa9.64□□□□□ -0.87
SHKBP1-228ENST00000602239 SPAG11BQ08648 103 aa9.64□□□□□ -0.87
SHKBP1-228ENST00000602239 SMAGPQ0VAQ4 97 aa9.64□□□□□ -0.87
SHKBP1-228ENST00000602239 ADIRFQ15847 76 aa9.64□□□□□ -0.87
SHKBP1-228ENST00000602239 TRBV24-1A0A075B6N3 115 aa9.63□□□□□ -0.87
SHKBP1-228ENST00000602239 CKS2P33552 79 aa9.63□□□□□ -0.87
SHKBP1-228ENST00000602239 TMEM18Q96B42 140 aa9.63□□□□□ -0.87
SHKBP1-228ENST00000602239 C20orf78Q9BR46 151 aa9.63□□□□□ -0.87
SHKBP1-228ENST00000602239 IGHV3OR16-9A0A0B4J2B5 98 aa9.62□□□□□ -0.87
SHKBP1-228ENST00000602239 LINC00862A6NCI5 91 aa9.62□□□□□ -0.87
SHKBP1-228ENST00000602239 TNFRSF6BO95407 300 aa9.62□□□□□ -0.87
SHKBP1-228ENST00000602239 MT-ND6P03923 174 aa9.62□□□□□ -0.87
SHKBP1-228ENST00000602239 RPL32P62910 135 aaKnown RBP9.62□□□□□ -0.87
SHKBP1-228ENST00000602239 SRSF3P84103 164 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms