RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	SMIM7	Q9BQ49	75 aa		11.04	□□□□□ -0.64
SHKBP1-223	ENST00000600552	TRBV6-5	A0A0K0K1A5	114 aa		11.03	□□□□□ -0.64
SHKBP1-223	ENST00000600552	SMKR1	H3BMG3	65 aa		11.03	□□□□□ -0.64
SHKBP1-223	ENST00000600552	ZNF561-AS1	K7EIQ3	104 aa		11.03	□□□□□ -0.64
SHKBP1-223	ENST00000600552	PRR3	P79522	188 aa	Known RBP	11.03	□□□□□ -0.64
SHKBP1-223	ENST00000600552	CARD19	Q96LW7	228 aa		11.03	□□□□□ -0.64
SHKBP1-223	ENST00000600552		A0A1B0GUT8	65 aa		11.02	□□□□□ -0.65
SHKBP1-223	ENST00000600552	HIGD1C	A8MV81	97 aa		11.02	□□□□□ -0.65
SHKBP1-223	ENST00000600552	ESD	P10768	282 aa		11.02	□□□□□ -0.65
SHKBP1-223	ENST00000600552	ODF1	Q14990	250 aa		11.02	□□□□□ -0.65
SHKBP1-223	ENST00000600552	AKAP14	Q86UN6	197 aa		11.02	□□□□□ -0.65
SHKBP1-223	ENST00000600552	AMN1	Q8IY45	258 aa		11.02	□□□□□ -0.65
SHKBP1-223	ENST00000600552	RAB4A	P20338	218 aa		11.01	□□□□□ -0.65
SHKBP1-223	ENST00000600552	FCER1G	P30273	86 aa		11.01	□□□□□ -0.65
SHKBP1-223	ENST00000600552	RNASE13	Q5GAN3	156 aa	Known RBP	11.01	□□□□□ -0.65
SHKBP1-223	ENST00000600552	ZNF664	Q8N3J9	261 aa		11.01	□□□□□ -0.65
SHKBP1-223	ENST00000600552	CDC42SE2	Q9NRR3	84 aa		11.01	□□□□□ -0.65
SHKBP1-223	ENST00000600552	C7orf77	A4D0Y5	90 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	ZNF727	A8MUV8	499 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	MAL	P21145	153 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	SYCN	Q0VAF6	134 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	GAGE2B	Q13066	116 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	CT83	Q5H943	113 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	TSKU	Q8WUA8	353 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	TMEM191A	Q9H0A3	160 aa		11	□□□□□ -0.65
SHKBP1-223	ENST00000600552	POLR2K	P53803	58 aa	Known RBP	10.99	□□□□□ -0.65
SHKBP1-223	ENST00000600552	CD164L2	Q6UWJ8	174 aa		10.99	□□□□□ -0.65
SHKBP1-223	ENST00000600552	LINC01551	Q86U37	167 aa		10.99	□□□□□ -0.65
SHKBP1-223	ENST00000600552	LINC00474	Q9P2X8	69 aa		10.99	□□□□□ -0.65
SHKBP1-223	ENST00000600552	RIG	Q13278	110 aa		10.98	□□□□□ -0.65
SHKBP1-223	ENST00000600552	PKIG	Q9Y2B9	76 aa		10.98	□□□□□ -0.65
SHKBP1-223	ENST00000600552	VCY	O14598	125 aa		10.97	□□□□□ -0.65
SHKBP1-223	ENST00000600552	CAMP	P49913	170 aa		10.97	□□□□□ -0.65
SHKBP1-223	ENST00000600552	MRPL52	Q86TS9	123 aa	Known RBP	10.97	□□□□□ -0.65
SHKBP1-223	ENST00000600552	IGLV4-69	A0A075B6H9	119 aa		10.96	□□□□□ -0.65
SHKBP1-223	ENST00000600552	TRAV13-1	A0A0B4J241	112 aa		10.96	□□□□□ -0.65
SHKBP1-223	ENST00000600552	TRBV27	A0A0K0K1C4	114 aa		10.96	□□□□□ -0.65
SHKBP1-223	ENST00000600552	LINC01600	Q96MT4	127 aa		10.96	□□□□□ -0.65
SHKBP1-223	ENST00000600552	OSTC	Q9NRP0	149 aa		10.96	□□□□□ -0.65
SHKBP1-223	ENST00000600552	COX7A2L	O14548	114 aa		10.95	□□□□□ -0.66
SHKBP1-223	ENST00000600552	SRP19	P09132	144 aa	Known RBP	10.95	□□□□□ -0.66
SHKBP1-223	ENST00000600552	C5orf38	Q86SI9	138 aa		10.95	□□□□□ -0.66
SHKBP1-223	ENST00000600552	NUP35	Q8NFH5	326 aa		10.95	□□□□□ -0.66
SHKBP1-223	ENST00000600552	ISOC2	Q96AB3	205 aa		10.95	□□□□□ -0.66
SHKBP1-223	ENST00000600552	TNXB	P22105	4242 aa		10.95	□□□□□ -0.66
SHKBP1-223	ENST00000600552	C1orf196	B1AJZ1	125 aa		10.94	□□□□□ -0.66
SHKBP1-223	ENST00000600552	CAMK2N2	Q96S95	79 aa		10.94	□□□□□ -0.66
SHKBP1-223	ENST00000600552	LOC107984640	A0A0U1RRK4	108 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552	PTTG1IP	P53801	180 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552	SUMO2	P61956	95 aa	Known RBP	10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552	REG3G	Q6UW15	175 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552	SPINK6	Q6UWN8	80 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552		Q6ZRP5	223 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552	FAM210A	Q96ND0	272 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552	KIR2DL4	Q99706	377 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552		V9GYV3	84 aa		10.93	□□□□□ -0.66
SHKBP1-223	ENST00000600552	SMAGP	Q0VAQ4	97 aa		10.92	□□□□□ -0.66
SHKBP1-223	ENST00000600552	ADIRF	Q15847	76 aa		10.92	□□□□□ -0.66
SHKBP1-223	ENST00000600552	NRAC	Q8N912	160 aa		10.92	□□□□□ -0.66
SHKBP1-223	ENST00000600552	UBE2D4	Q9Y2X8	147 aa		10.92	□□□□□ -0.66
SHKBP1-223	ENST00000600552		A0A0J9YXV3	536 aa		10.91	□□□□□ -0.66
SHKBP1-223	ENST00000600552	PPP1R17	O96001	155 aa		10.91	□□□□□ -0.66
SHKBP1-223	ENST00000600552	RPL18A	Q02543	176 aa	Known RBP	10.91	□□□□□ -0.66
SHKBP1-223	ENST00000600552	TMEM241	Q24JQ0	296 aa		10.91	□□□□□ -0.66
SHKBP1-223	ENST00000600552	MRPL51	Q4U2R6	128 aa	Known RBP	10.91	□□□□□ -0.66
SHKBP1-223	ENST00000600552		Q6ZUT4	128 aa		10.91	□□□□□ -0.66
SHKBP1-223	ENST00000600552	OPRPN	Q99935	248 aa	Predicted RBP	10.91	□□□□□ -0.66
SHKBP1-223	ENST00000600552		A0A1W2PNN7	141 aa		10.9	□□□□□ -0.66
SHKBP1-223	ENST00000600552	NAT8B	Q9UHF3	227 aa		10.9	□□□□□ -0.66
SHKBP1-223	ENST00000600552	PPP1R2P9	O14990	202 aa		10.88	□□□□□ -0.67
SHKBP1-223	ENST00000600552	CKS2	P33552	79 aa		10.88	□□□□□ -0.67
SHKBP1-223	ENST00000600552	RPL23	P62829	140 aa	Known RBP	10.88	□□□□□ -0.67
SHKBP1-223	ENST00000600552	SPAG11B	Q08648	103 aa		10.88	□□□□□ -0.67
SHKBP1-223	ENST00000600552	FAM104B	Q5XKR9	115 aa		10.88	□□□□□ -0.67
SHKBP1-223	ENST00000600552	TMEM18	Q96B42	140 aa		10.88	□□□□□ -0.67
SHKBP1-223	ENST00000600552	APOM	O95445	188 aa		10.87	□□□□□ -0.67
SHKBP1-223	ENST00000600552	MT-ND6	P03923	174 aa		10.87	□□□□□ -0.67
SHKBP1-223	ENST00000600552	RPL39	P62891	51 aa	Known RBP	10.87	□□□□□ -0.67
SHKBP1-223	ENST00000600552	SRSF9	Q13242	221 aa	Known RBP eCLIP	10.87	□□□□□ -0.67
SHKBP1-223	ENST00000600552	C9orf116	Q5BN46	136 aa	Predicted RBP	10.87	□□□□□ -0.67
SHKBP1-223	ENST00000600552	KRTAP10-8	P60410	259 aa		10.86	□□□□□ -0.67
SHKBP1-223	ENST00000600552	FAM74A3	Q4VXF1	159 aa		10.86	□□□□□ -0.67
SHKBP1-223	ENST00000600552	PHF5A	Q7RTV0	110 aa	Known RBP	10.86	□□□□□ -0.67
SHKBP1-223	ENST00000600552	CSDC2	Q9Y534	153 aa	Known RBP	10.86	□□□□□ -0.67
SHKBP1-223	ENST00000600552	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	10.85	□□□□□ -0.67
SHKBP1-223	ENST00000600552	MRPL54	Q6P161	138 aa	Known RBP	10.85	□□□□□ -0.67
SHKBP1-223	ENST00000600552	ORAOV1	Q8WV07	137 aa		10.85	□□□□□ -0.67
SHKBP1-223	ENST00000600552	C2orf48	Q96LS8	159 aa		10.85	□□□□□ -0.67
SHKBP1-223	ENST00000600552	NAT8	Q9UHE5	227 aa		10.85	□□□□□ -0.67
SHKBP1-223	ENST00000600552		C9JQL5	133 aa		10.84	□□□□□ -0.67
SHKBP1-223	ENST00000600552	PSORS1C2	Q9UIG4	136 aa		10.84	□□□□□ -0.67
SHKBP1-223	ENST00000600552	SMIM27	A0A1W2PRY6	76 aa		10.83	□□□□□ -0.68
SHKBP1-223	ENST00000600552	TCAP	O15273	167 aa		10.83	□□□□□ -0.68
SHKBP1-223	ENST00000600552	TNFRSF6B	O95407	300 aa		10.83	□□□□□ -0.68
SHKBP1-223	ENST00000600552	C1orf137	Q5JT78	98 aa		10.83	□□□□□ -0.68
SHKBP1-223	ENST00000600552	C20orf78	Q9BR46	151 aa		10.83	□□□□□ -0.68
SHKBP1-223	ENST00000600552	TIMM21	Q9BVV7	248 aa		10.83	□□□□□ -0.68
SHKBP1-223	ENST00000600552	LINC00862	A6NCI5	91 aa		10.82	□□□□□ -0.68
SHKBP1-223	ENST00000600552		D6R8Y8	96 aa		10.82	□□□□□ -0.68
SHKBP1-223	ENST00000600552	SRSF3	P84103	164 aa	Known RBP	10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms