RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 OCC1Q8TAD7 63 aa13.13□□□□□ -0.31
PNKP-212ENST00000599454 ODF1Q14990 250 aa13.12□□□□□ -0.31
PNKP-212ENST00000599454 CD164L2Q6UWJ8 174 aa13.12□□□□□ -0.31
PNKP-212ENST00000599454 LINC00526Q96FQ7 95 aa13.12□□□□□ -0.31
PNKP-212ENST00000599454 MRAP2Q96G30 205 aa13.12□□□□□ -0.31
PNKP-212ENST00000599454 MRPL52Q86TS9 123 aaKnown RBP13.11□□□□□ -0.31
PNKP-212ENST00000599454 ISOC2Q96AB3 205 aa13.11□□□□□ -0.31
PNKP-212ENST00000599454 TSHBP01222 138 aa13.1□□□□□ -0.31
PNKP-212ENST00000599454 PTTG1IPP53801 180 aa13.1□□□□□ -0.31
PNKP-212ENST00000599454 ST20Q9HBF5 79 aa13.1□□□□□ -0.31
PNKP-212ENST00000599454 CDC42SE2Q9NRR3 84 aa13.1□□□□□ -0.31
PNKP-212ENST00000599454 A8MWL6 223 aa13.09□□□□□ -0.31
PNKP-212ENST00000599454 GATCO43716 136 aaKnown RBP13.09□□□□□ -0.31
PNKP-212ENST00000599454 FAM231DQ6ZW35 169 aa13.09□□□□□ -0.31
PNKP-212ENST00000599454 LOC107984640A0A0U1RRK4 108 aa13.08□□□□□ -0.32
PNKP-212ENST00000599454 CAMPP49913 170 aa13.08□□□□□ -0.32
PNKP-212ENST00000599454 ZNF664Q8N3J9 261 aa13.08□□□□□ -0.32
PNKP-212ENST00000599454 BORCS7Q96B45 105 aa13.08□□□□□ -0.32
PNKP-212ENST00000599454 TMEM242Q9NWH2 141 aa13.08□□□□□ -0.32
PNKP-212ENST00000599454 CT83Q5H943 113 aa13.07□□□□□ -0.32
PNKP-212ENST00000599454 C7orf77A4D0Y5 90 aa13.06□□□□□ -0.32
PNKP-212ENST00000599454 SLC51BQ86UW2 128 aa13.06□□□□□ -0.32
PNKP-212ENST00000599454 TRBV27A0A0K0K1C4 114 aa13.05□□□□□ -0.32
PNKP-212ENST00000599454 TMEM250H0YL14 139 aa13.05□□□□□ -0.32
PNKP-212ENST00000599454 POLR2KP53803 58 aaKnown RBP13.05□□□□□ -0.32
PNKP-212ENST00000599454 GAGE2BQ13066 116 aa13.05□□□□□ -0.32
PNKP-212ENST00000599454 IGLV4-69A0A075B6H9 119 aa13.04□□□□□ -0.32
PNKP-212ENST00000599454 C1orf196B1AJZ1 125 aa13.04□□□□□ -0.32
PNKP-212ENST00000599454 MALP21145 153 aa13.04□□□□□ -0.32
PNKP-212ENST00000599454 SMAGPQ0VAQ4 97 aa13.04□□□□□ -0.32
PNKP-212ENST00000599454 TMEM191AQ9H0A3 160 aa13.04□□□□□ -0.32
PNKP-212ENST00000599454 GAS8-AS1O95177 125 aa13.03□□□□□ -0.32
PNKP-212ENST00000599454 COX7A2LO14548 114 aa13.02□□□□□ -0.33
PNKP-212ENST00000599454 NUP35Q8NFH5 326 aa13.02□□□□□ -0.33
PNKP-212ENST00000599454 CAMK2N2Q96S95 79 aa13.02□□□□□ -0.33
PNKP-212ENST00000599454 CSDC2Q9Y534 153 aaKnown RBP13.02□□□□□ -0.33
PNKP-212ENST00000599454 A0A1B0GUT8 65 aa13.01□□□□□ -0.33
PNKP-212ENST00000599454 A0A1W2PNN7 141 aa13.01□□□□□ -0.33
PNKP-212ENST00000599454 APOMO95445 188 aa13.01□□□□□ -0.33
PNKP-212ENST00000599454 C2orf48Q96LS8 159 aa13.01□□□□□ -0.33
PNKP-212ENST00000599454 VCYO14598 125 aa12.99□□□□□ -0.33
PNKP-212ENST00000599454 MT-ND6P03923 174 aa12.99□□□□□ -0.33
PNKP-212ENST00000599454 RAB4AP20338 218 aa12.99□□□□□ -0.33
PNKP-212ENST00000599454 FCER1GP30273 86 aa12.99□□□□□ -0.33
PNKP-212ENST00000599454 TCTE3Q8IZS6 198 aa12.99□□□□□ -0.33
PNKP-212ENST00000599454 TSKUQ8WUA8 353 aa12.99□□□□□ -0.33
PNKP-212ENST00000599454 PSORS1C2Q9UIG4 136 aa12.99□□□□□ -0.33
PNKP-212ENST00000599454 HIGD1CA8MV81 97 aa12.98□□□□□ -0.33
PNKP-212ENST00000599454 PPP1R17O96001 155 aa12.98□□□□□ -0.33
PNKP-212ENST00000599454 C9orf116Q5BN46 136 aaPredicted RBP12.98□□□□□ -0.33
PNKP-212ENST00000599454 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.96□□□□□ -0.33
PNKP-212ENST00000599454 BLOC1S1P78537 153 aa12.96□□□□□ -0.33
PNKP-212ENST00000599454 RNF151Q2KHN1 245 aa12.96□□□□□ -0.33
PNKP-212ENST00000599454 AMN1Q8IY45 258 aa12.96□□□□□ -0.33
PNKP-212ENST00000599454 UBE2D4Q9Y2X8 147 aa12.96□□□□□ -0.33
PNKP-212ENST00000599454 KIR2DL4Q99706 377 aa12.95□□□□□ -0.34
PNKP-212ENST00000599454 TRAV13-1A0A0B4J241 112 aa12.94□□□□□ -0.34
PNKP-212ENST00000599454 SUMO2P61956 95 aaKnown RBP12.94□□□□□ -0.34
PNKP-212ENST00000599454 RPL18AQ02543 176 aaKnown RBP12.94□□□□□ -0.34
PNKP-212ENST00000599454 C1orf137Q5JT78 98 aa12.94□□□□□ -0.34
PNKP-212ENST00000599454 CEBPGP53567 150 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 SPAG11BQ08648 103 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 RIGQ13278 110 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 C5orf38Q86SI9 138 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 LINC01551Q86U37 167 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 TMEM18Q96B42 140 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 TIMM21Q9BVV7 248 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 OSTCQ9NRP0 149 aa12.93□□□□□ -0.34
PNKP-212ENST00000599454 F8WDY8 70 aa12.92□□□□□ -0.34
PNKP-212ENST00000599454 PPP1R2P9O14990 202 aa12.92□□□□□ -0.34
PNKP-212ENST00000599454 RNASE13Q5GAN3 156 aaKnown RBP12.92□□□□□ -0.34
PNKP-212ENST00000599454 NRACQ8N912 160 aa12.92□□□□□ -0.34
PNKP-212ENST00000599454 OR10D4PQ8NGN7 298 aa12.92□□□□□ -0.34
PNKP-212ENST00000599454 SMIM7Q9BQ49 75 aa12.92□□□□□ -0.34
PNKP-212ENST00000599454 PHF5AQ7RTV0 110 aaKnown RBP12.91□□□□□ -0.34
PNKP-212ENST00000599454 DIRC1Q969H9 104 aa12.91□□□□□ -0.34
PNKP-212ENST00000599454 SMKR1H3BMG3 65 aa12.9□□□□□ -0.34
PNKP-212ENST00000599454 Q6ZUT4 128 aa12.9□□□□□ -0.34
PNKP-212ENST00000599454 OPRPNQ99935 248 aaPredicted RBP12.9□□□□□ -0.34
PNKP-212ENST00000599454 MRPL35Q9NZE8 188 aaKnown RBP12.9□□□□□ -0.34
PNKP-212ENST00000599454 IMMP2LQ96T52 175 aa12.89□□□□□ -0.35
PNKP-212ENST00000599454 IGLV7-43P04211 117 aa12.88□□□□□ -0.35
PNKP-212ENST00000599454 ZNF727A8MUV8 499 aa12.87□□□□□ -0.35
PNKP-212ENST00000599454 TCAPO15273 167 aa12.87□□□□□ -0.35
PNKP-212ENST00000599454 ALKAL2Q6UX46 152 aa12.87□□□□□ -0.35
PNKP-212ENST00000599454 C20orf78Q9BR46 151 aa12.86□□□□□ -0.35
PNKP-212ENST00000599454 EIF5A2Q9GZV4 153 aaKnown RBP12.86□□□□□ -0.35
PNKP-212ENST00000599454 V9GYV3 84 aa12.86□□□□□ -0.35
PNKP-212ENST00000599454 LINC00862A6NCI5 91 aa12.85□□□□□ -0.35
PNKP-212ENST00000599454 NDUFA1O15239 70 aa12.85□□□□□ -0.35
PNKP-212ENST00000599454 TLX1NBP0CAT3 122 aa12.85□□□□□ -0.35
PNKP-212ENST00000599454 RPL32P62910 135 aaKnown RBP12.85□□□□□ -0.35
PNKP-212ENST00000599454 PRR26Q8N8Z3 221 aa12.85□□□□□ -0.35
PNKP-212ENST00000599454 ORAOV1Q8WV07 137 aa12.85□□□□□ -0.35
PNKP-212ENST00000599454 A0A087WZ39 114 aa12.84□□□□□ -0.35
PNKP-212ENST00000599454 H0Y9J4 135 aa12.84□□□□□ -0.35
PNKP-212ENST00000599454 TMEM241Q24JQ0 296 aa12.84□□□□□ -0.35
PNKP-212ENST00000599454 FAM104BQ5XKR9 115 aa12.84□□□□□ -0.35
PNKP-212ENST00000599454 NAT8BQ9UHF3 227 aa12.84□□□□□ -0.35
PNKP-212ENST00000599454 TRBV24-1A0A075B6N3 115 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms