RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CCL25O15444 150 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 TSHBP01222 138 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 SS18Q15532 418 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 AMN1Q8IY45 258 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 OSTCQ9NRP0 149 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 PKHD1L1Q86WI1 4243 aa6.21□□□□□ -1.42
VRK3-216ENST00000599342 IGHV1-58A0A0C4DH39 117 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 GAS8-AS1O95177 125 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 ESDP10768 282 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 RAB4AP20338 218 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 FCER1GP30273 86 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 RIGQ13278 110 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 PRSS3P2Q8NHM4 247 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 LINC00474Q9P2X8 69 aa6.2□□□□□ -1.42
VRK3-216ENST00000599342 TRBV27A0A0K0K1C4 114 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 ZNF561-AS1K7EIQ3 104 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 PPP1R17O96001 155 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 POLR2KP53803 58 aaKnown RBP6.19□□□□□ -1.42
VRK3-216ENST00000599342 SMAGPQ0VAQ4 97 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 CD164L2Q6UWJ8 174 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 MRPL52Q86TS9 123 aaKnown RBP6.19□□□□□ -1.42
VRK3-216ENST00000599342 STPG4Q8N801 248 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 CARD19Q96LW7 228 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 CDC42SE2Q9NRR3 84 aa6.19□□□□□ -1.42
VRK3-216ENST00000599342 A0A096LNI7 61 aa6.18□□□□□ -1.42
VRK3-216ENST00000599342 VCYO14598 125 aa6.18□□□□□ -1.42
VRK3-216ENST00000599342 SRP19P09132 144 aaKnown RBP6.18□□□□□ -1.42
VRK3-216ENST00000599342 ZNF664Q8N3J9 261 aa6.18□□□□□ -1.42
VRK3-216ENST00000599342 NUP35Q8NFH5 326 aa6.18□□□□□ -1.42
VRK3-216ENST00000599342 KIR2DL4Q99706 377 aa6.18□□□□□ -1.42
VRK3-216ENST00000599342 NAT8BQ9UHF3 227 aa6.18□□□□□ -1.42
VRK3-216ENST00000599342 V9GYV3 84 aa6.18□□□□□ -1.42
VRK3-216ENST00000599342 SMKR1H3BMG3 65 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 PPP1R2P9O14990 202 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 MALP21145 153 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 SUMO2P61956 95 aaKnown RBP6.17□□□□□ -1.42
VRK3-216ENST00000599342 TMEM241Q24JQ0 296 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 FAM74A3Q4VXF1 159 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 ISOC2Q96AB3 205 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 TMEM18Q96B42 140 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 LINC00526Q96FQ7 95 aa6.17□□□□□ -1.42
VRK3-216ENST00000599342 C1orf196B1AJZ1 125 aa6.16□□□□□ -1.42
VRK3-216ENST00000599342 MT1HL1P0DM35 61 aa6.16□□□□□ -1.42
VRK3-216ENST00000599342 CAMPP49913 170 aa6.16□□□□□ -1.42
VRK3-216ENST00000599342 PRR3P79522 188 aaKnown RBP6.16□□□□□ -1.42
VRK3-216ENST00000599342 SYCNQ0VAF6 134 aa6.16□□□□□ -1.42
VRK3-216ENST00000599342 ADIRFQ15847 76 aa6.16□□□□□ -1.42
VRK3-216ENST00000599342 CSDC2Q9Y534 153 aaKnown RBP6.16□□□□□ -1.42
VRK3-216ENST00000599342 HMCN2Q8NDA2 5059 aa6.15□□□□□ -1.42
VRK3-216ENST00000599342 COX7A2LO14548 114 aa6.15□□□□□ -1.42
VRK3-216ENST00000599342 RPL23P62829 140 aaKnown RBP6.15□□□□□ -1.42
VRK3-216ENST00000599342 RNASE13Q5GAN3 156 aaKnown RBP6.15□□□□□ -1.42
VRK3-216ENST00000599342 NRACQ8N912 160 aa6.15□□□□□ -1.42
VRK3-216ENST00000599342 NAT8Q9UHE5 227 aa6.15□□□□□ -1.42
VRK3-216ENST00000599342 UBE2D4Q9Y2X8 147 aa6.15□□□□□ -1.42
VRK3-216ENST00000599342 TRAV13-1A0A0B4J241 112 aa6.14□□□□□ -1.43
VRK3-216ENST00000599342 A0A1B0GW15 77 aa6.14□□□□□ -1.43
VRK3-216ENST00000599342 TCAPO15273 167 aa6.14□□□□□ -1.43
VRK3-216ENST00000599342 MRPL51Q4U2R6 128 aaKnown RBP6.14□□□□□ -1.43
VRK3-216ENST00000599342 FAM104BQ5XKR9 115 aa6.14□□□□□ -1.43
VRK3-216ENST00000599342 CAMK2N2Q96S95 79 aa6.14□□□□□ -1.43
VRK3-216ENST00000599342 IGLV4-69A0A075B6H9 119 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 LOC107984640A0A0U1RRK4 108 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 SMIM27A0A1W2PRY6 76 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 LINC00862A6NCI5 91 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 APOMO95445 188 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 CKS2P33552 79 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 PTTG1IPP53801 180 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 GAGE2BQ13066 116 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 PEA15Q15121 130 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 Q6ZUT4 128 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 C20orf78Q9BR46 151 aa6.13□□□□□ -1.43
VRK3-216ENST00000599342 F8W036 122 aa6.12□□□□□ -1.43
VRK3-216ENST00000599342 S100A8P05109 93 aa6.12□□□□□ -1.43
VRK3-216ENST00000599342 Q6ZRP5 223 aa6.12□□□□□ -1.43
VRK3-216ENST00000599342 C5orf38Q86SI9 138 aa6.12□□□□□ -1.43
VRK3-216ENST00000599342 TIMM21Q9BVV7 248 aa6.12□□□□□ -1.43
VRK3-216ENST00000599342 TRBV24-1A0A075B6N3 115 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 C9JQL5 133 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 TNFRSF6BO95407 300 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 RPL32P62910 135 aaKnown RBP6.11□□□□□ -1.43
VRK3-216ENST00000599342 HBBP68871 147 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 RPL18AQ02543 176 aaKnown RBP6.11□□□□□ -1.43
VRK3-216ENST00000599342 SPAG11BQ08648 103 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 MRPL54Q6P161 138 aaKnown RBP6.11□□□□□ -1.43
VRK3-216ENST00000599342 REG3GQ6UW15 175 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 SPINK6Q6UWN8 80 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 C2orf48Q96LS8 159 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 LINC01600Q96MT4 127 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 SMIM2Q9BVW6 85 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 SMDT1Q9H4I9 107 aa6.11□□□□□ -1.43
VRK3-216ENST00000599342 D6R8Y8 96 aa6.1□□□□□ -1.43
VRK3-216ENST00000599342 RPL39P62891 51 aaKnown RBP6.1□□□□□ -1.43
VRK3-216ENST00000599342 SRSF3P84103 164 aaKnown RBP6.1□□□□□ -1.43
VRK3-216ENST00000599342 OR10D4PQ8NGN7 298 aa6.1□□□□□ -1.43
VRK3-216ENST00000599342 SPANXA1Q9NS26 97 aa6.1□□□□□ -1.43
VRK3-216ENST00000599342 A0A1B0GVG6 124 aa6.09□□□□□ -1.43
VRK3-216ENST00000599342 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.09□□□□□ -1.43
VRK3-216ENST00000599342 PPBPP02775 128 aa6.09□□□□□ -1.43
VRK3-216ENST00000599342 A0A0J9YXV3 536 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms