RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	FAM231D	Q6ZW35	169 aa		6.56	□□□□□ -1.36
LSM4-205	ENST00000597776	ST20	Q9HBF5	79 aa		6.56	□□□□□ -1.36
LSM4-205	ENST00000597776	SS18	Q15532	418 aa		6.55	□□□□□ -1.36
LSM4-205	ENST00000597776	CT83	Q5H943	113 aa		6.55	□□□□□ -1.36
LSM4-205	ENST00000597776	ALKAL2	Q6UX46	152 aa		6.55	□□□□□ -1.36
LSM4-205	ENST00000597776	BORCS7	Q96B45	105 aa		6.55	□□□□□ -1.36
LSM4-205	ENST00000597776	CDC42SE2	Q9NRR3	84 aa		6.55	□□□□□ -1.36
LSM4-205	ENST00000597776	LINC00474	Q9P2X8	69 aa		6.55	□□□□□ -1.36
LSM4-205	ENST00000597776		A0A1B0GUT8	65 aa		6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	HIGD1C	A8MV81	97 aa		6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	SMKR1	H3BMG3	65 aa		6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	POLR2K	P53803	58 aa	Known RBP	6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	SYCN	Q0VAF6	134 aa		6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	CD164L2	Q6UWJ8	174 aa		6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	MRPL52	Q86TS9	123 aa	Known RBP	6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	AMN1	Q8IY45	258 aa		6.54	□□□□□ -1.36
LSM4-205	ENST00000597776	ZNF664	Q8N3J9	261 aa		6.54	□□□□□ -1.36
LSM4-205	ENST00000597776		A0A0J9YXV3	536 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	TRBV27	A0A0K0K1C4	114 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	C7orf77	A4D0Y5	90 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	ZNF561-AS1	K7EIQ3	104 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	RAB4A	P20338	218 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	CAMP	P49913	170 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	RNASE13	Q5GAN3	156 aa	Known RBP	6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	LINC01551	Q86U37	167 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	TSKU	Q8WUA8	353 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	SMIM7	Q9BQ49	75 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	TMEM191A	Q9H0A3	160 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	PKIG	Q9Y2B9	76 aa		6.53	□□□□□ -1.36
LSM4-205	ENST00000597776	RNF213	Q63HN8	5207 aa		6.52	□□□□□ -1.37
LSM4-205	ENST00000597776	IGLV4-69	A0A075B6H9	119 aa		6.52	□□□□□ -1.37
LSM4-205	ENST00000597776	PTTG1IP	P53801	180 aa		6.52	□□□□□ -1.37
LSM4-205	ENST00000597776	KRTAP10-8	P60410	259 aa		6.52	□□□□□ -1.37
LSM4-205	ENST00000597776	BLOC1S1	P78537	153 aa		6.52	□□□□□ -1.37
LSM4-205	ENST00000597776	GAGE2B	Q13066	116 aa		6.52	□□□□□ -1.37
LSM4-205	ENST00000597776	SPINK6	Q6UWN8	80 aa		6.52	□□□□□ -1.37
LSM4-205	ENST00000597776		A0A1W2PNN7	141 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	COX7A2L	O14548	114 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	MAL	P21145	153 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	FCER1G	P30273	86 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	SRSF9	Q13242	221 aa	Known RBP eCLIP	6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	REG3G	Q6UW15	175 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776		Q6ZRP5	223 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	AKAP14	Q86UN6	197 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	NRAC	Q8N912	160 aa		6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	EIF5A2	Q9GZV4	153 aa	Known RBP	6.51	□□□□□ -1.37
LSM4-205	ENST00000597776	TRAV13-1	A0A0B4J241	112 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	LOC107984640	A0A0U1RRK4	108 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	ZNF727	A8MUV8	499 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	VCY	O14598	125 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776		Q6ZUT4	128 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	NUP35	Q8NFH5	326 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	FAM210A	Q96ND0	272 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	OSTC	Q9NRP0	149 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	UBE2D4	Q9Y2X8	147 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776		V9GYV3	84 aa		6.5	□□□□□ -1.37
LSM4-205	ENST00000597776	hCG_2014768	A0A024R1R8	64 aa		6.49	□□□□□ -1.37
LSM4-205	ENST00000597776	C1orf196	B1AJZ1	125 aa		6.49	□□□□□ -1.37
LSM4-205	ENST00000597776	SUMO2	P61956	95 aa	Known RBP	6.49	□□□□□ -1.37
LSM4-205	ENST00000597776	RIG	Q13278	110 aa		6.49	□□□□□ -1.37
LSM4-205	ENST00000597776	C5orf38	Q86SI9	138 aa		6.49	□□□□□ -1.37
LSM4-205	ENST00000597776	ISOC2	Q96AB3	205 aa		6.49	□□□□□ -1.37
LSM4-205	ENST00000597776	CAMK2N2	Q96S95	79 aa		6.49	□□□□□ -1.37
LSM4-205	ENST00000597776	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	6.48	□□□□□ -1.37
LSM4-205	ENST00000597776	APOM	O95445	188 aa		6.48	□□□□□ -1.37
LSM4-205	ENST00000597776	SRP19	P09132	144 aa	Known RBP	6.48	□□□□□ -1.37
LSM4-205	ENST00000597776	RPL18A	Q02543	176 aa	Known RBP	6.48	□□□□□ -1.37
LSM4-205	ENST00000597776	C9orf116	Q5BN46	136 aa	Predicted RBP	6.48	□□□□□ -1.37
LSM4-205	ENST00000597776	OPRPN	Q99935	248 aa	Predicted RBP	6.48	□□□□□ -1.37
LSM4-205	ENST00000597776	CSDC2	Q9Y534	153 aa	Known RBP	6.48	□□□□□ -1.37
LSM4-205	ENST00000597776	SPAG11B	Q08648	103 aa		6.47	□□□□□ -1.37
LSM4-205	ENST00000597776	MRPL51	Q4U2R6	128 aa	Known RBP	6.47	□□□□□ -1.37
LSM4-205	ENST00000597776	KIR2DL4	Q99706	377 aa		6.47	□□□□□ -1.37
LSM4-205	ENST00000597776	PSORS1C2	Q9UIG4	136 aa		6.47	□□□□□ -1.37
LSM4-205	ENST00000597776	PPP1R17	O96001	155 aa		6.46	□□□□□ -1.38
LSM4-205	ENST00000597776	MT-ND6	P03923	174 aa		6.46	□□□□□ -1.38
LSM4-205	ENST00000597776	RPL39	P62891	51 aa	Known RBP	6.46	□□□□□ -1.38
LSM4-205	ENST00000597776	SMAGP	Q0VAQ4	97 aa		6.46	□□□□□ -1.38
LSM4-205	ENST00000597776	FAM104B	Q5XKR9	115 aa		6.46	□□□□□ -1.38
LSM4-205	ENST00000597776	PHF5A	Q7RTV0	110 aa	Known RBP	6.46	□□□□□ -1.38
LSM4-205	ENST00000597776	C2orf48	Q96LS8	159 aa		6.46	□□□□□ -1.38
LSM4-205	ENST00000597776	PPP1R2P9	O14990	202 aa		6.45	□□□□□ -1.38
LSM4-205	ENST00000597776	RPL23	P62829	140 aa	Known RBP	6.45	□□□□□ -1.38
LSM4-205	ENST00000597776	FAM104A	Q969W3	186 aa		6.45	□□□□□ -1.38
LSM4-205	ENST00000597776	TIMM21	Q9BVV7	248 aa		6.45	□□□□□ -1.38
LSM4-205	ENST00000597776	NAT8B	Q9UHF3	227 aa		6.45	□□□□□ -1.38
LSM4-205	ENST00000597776		C9JQL5	133 aa		6.44	□□□□□ -1.38
LSM4-205	ENST00000597776	ADIRF	Q15847	76 aa		6.44	□□□□□ -1.38
LSM4-205	ENST00000597776	TMEM241	Q24JQ0	296 aa		6.44	□□□□□ -1.38
LSM4-205	ENST00000597776	C1orf137	Q5JT78	98 aa		6.44	□□□□□ -1.38
LSM4-205	ENST00000597776	ORAOV1	Q8WV07	137 aa		6.44	□□□□□ -1.38
LSM4-205	ENST00000597776	TMEM18	Q96B42	140 aa		6.44	□□□□□ -1.38
LSM4-205	ENST00000597776	LPA	P08519	4548 aa		6.44	□□□□□ -1.38
LSM4-205	ENST00000597776	SMIM27	A0A1W2PRY6	76 aa		6.43	□□□□□ -1.38
LSM4-205	ENST00000597776	FAM168B	A1KXE4	195 aa		6.43	□□□□□ -1.38
LSM4-205	ENST00000597776	TNFRSF6B	O95407	300 aa		6.43	□□□□□ -1.38
LSM4-205	ENST00000597776	CKS2	P33552	79 aa		6.43	□□□□□ -1.38
LSM4-205	ENST00000597776	FAM74A3	Q4VXF1	159 aa		6.43	□□□□□ -1.38
LSM4-205	ENST00000597776	C10orf25	Q5T742	122 aa		6.43	□□□□□ -1.38
LSM4-205	ENST00000597776	OR10D4P	Q8NGN7	298 aa		6.43	□□□□□ -1.38

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