RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 SMIM15Q7Z3B0 74 aa7.25□□□□□ -1.25
CLIP3-204ENST00000590559 CARD19Q96LW7 228 aa7.25□□□□□ -1.25
CLIP3-204ENST00000590559 TRBV27A0A0K0K1C4 114 aa7.24□□□□□ -1.25
CLIP3-204ENST00000590559 PMCHP20382 165 aa7.24□□□□□ -1.25
CLIP3-204ENST00000590559 CT83Q5H943 113 aa7.24□□□□□ -1.25
CLIP3-204ENST00000590559 REG3GQ6UW15 175 aa7.24□□□□□ -1.25
CLIP3-204ENST00000590559 Q6ZRP5 223 aa7.24□□□□□ -1.25
CLIP3-204ENST00000590559 SLC51BQ86UW2 128 aa7.24□□□□□ -1.25
CLIP3-204ENST00000590559 PKIGQ9Y2B9 76 aa7.24□□□□□ -1.25
CLIP3-204ENST00000590559 A8MWL6 223 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 TMEM250H0YL14 139 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 GATCO43716 136 aaKnown RBP7.23□□□□□ -1.25
CLIP3-204ENST00000590559 PTTG1IPP53801 180 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 SYCNQ0VAF6 134 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 TCTE3Q8IZS6 198 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 ZNF664Q8N3J9 261 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 TMEM101Q96IK0 257 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 BTF3L4Q96K17 158 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 TMEM191AQ9H0A3 160 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 TMEM242Q9NWH2 141 aa7.23□□□□□ -1.25
CLIP3-204ENST00000590559 SS18Q15532 418 aa7.22□□□□□ -1.25
CLIP3-204ENST00000590559 MRAP2Q96G30 205 aa7.22□□□□□ -1.25
CLIP3-204ENST00000590559 ST20Q9HBF5 79 aa7.22□□□□□ -1.25
CLIP3-204ENST00000590559 A0A1W2PNN7 141 aa7.21□□□□□ -1.26
CLIP3-204ENST00000590559 ZNF561-AS1K7EIQ3 104 aa7.21□□□□□ -1.26
CLIP3-204ENST00000590559 RAB4AP20338 218 aa7.21□□□□□ -1.26
CLIP3-204ENST00000590559 CAMPP49913 170 aa7.21□□□□□ -1.26
CLIP3-204ENST00000590559 NUP35Q8NFH5 326 aa7.21□□□□□ -1.26
CLIP3-204ENST00000590559 CSDC2Q9Y534 153 aaKnown RBP7.21□□□□□ -1.26
CLIP3-204ENST00000590559 IGLV4-69A0A075B6H9 119 aa7.2□□□□□ -1.26
CLIP3-204ENST00000590559 LOC107984640A0A0U1RRK4 108 aa7.2□□□□□ -1.26
CLIP3-204ENST00000590559 A0A1B0GUT8 65 aa7.19□□□□□ -1.26
CLIP3-204ENST00000590559 C7orf77A4D0Y5 90 aa7.19□□□□□ -1.26
CLIP3-204ENST00000590559 HIGD1CA8MV81 97 aa7.19□□□□□ -1.26
CLIP3-204ENST00000590559 TSKUQ8WUA8 353 aa7.19□□□□□ -1.26
CLIP3-204ENST00000590559 C2orf48Q96LS8 159 aa7.19□□□□□ -1.26
CLIP3-204ENST00000590559 UBE2D4Q9Y2X8 147 aa7.19□□□□□ -1.26
CLIP3-204ENST00000590559 C1orf196B1AJZ1 125 aa7.18□□□□□ -1.26
CLIP3-204ENST00000590559 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.18□□□□□ -1.26
CLIP3-204ENST00000590559 LINC01551Q86U37 167 aa7.18□□□□□ -1.26
CLIP3-204ENST00000590559 AMN1Q8IY45 258 aa7.18□□□□□ -1.26
CLIP3-204ENST00000590559 NRACQ8N912 160 aa7.18□□□□□ -1.26
CLIP3-204ENST00000590559 FAM104AQ969W3 186 aa7.18□□□□□ -1.26
CLIP3-204ENST00000590559 ISOC2Q96AB3 205 aa7.18□□□□□ -1.26
CLIP3-204ENST00000590559 PSORS1C2Q9UIG4 136 aa7.18□□□□□ -1.26
CLIP3-204ENST00000590559 COX7A2LO14548 114 aa7.17□□□□□ -1.26
CLIP3-204ENST00000590559 VCYO14598 125 aa7.17□□□□□ -1.26
CLIP3-204ENST00000590559 APOMO95445 188 aa7.17□□□□□ -1.26
CLIP3-204ENST00000590559 GAGE2BQ13066 116 aa7.17□□□□□ -1.26
CLIP3-204ENST00000590559 OSTCQ9NRP0 149 aa7.17□□□□□ -1.26
CLIP3-204ENST00000590559 SMKR1H3BMG3 65 aa7.16□□□□□ -1.26
CLIP3-204ENST00000590559 BLOC1S1P78537 153 aa7.16□□□□□ -1.26
CLIP3-204ENST00000590559 RNF151Q2KHN1 245 aa7.16□□□□□ -1.26
CLIP3-204ENST00000590559 C9orf116Q5BN46 136 aaPredicted RBP7.16□□□□□ -1.26
CLIP3-204ENST00000590559 TIMM21Q9BVV7 248 aa7.16□□□□□ -1.26
CLIP3-204ENST00000590559 MALP21145 153 aa7.15□□□□□ -1.26
CLIP3-204ENST00000590559 SUMO2P61956 95 aaKnown RBP7.15□□□□□ -1.26
CLIP3-204ENST00000590559 RNASE13Q5GAN3 156 aaKnown RBP7.15□□□□□ -1.26
CLIP3-204ENST00000590559 ALKAL2Q6UX46 152 aa7.15□□□□□ -1.26
CLIP3-204ENST00000590559 BORCS7Q96B45 105 aa7.15□□□□□ -1.26
CLIP3-204ENST00000590559 CAMK2N2Q96S95 79 aa7.15□□□□□ -1.26
CLIP3-204ENST00000590559 SMIM7Q9BQ49 75 aa7.15□□□□□ -1.26
CLIP3-204ENST00000590559 V9GYV3 84 aa7.15□□□□□ -1.26
CLIP3-204ENST00000590559 Q6ZUT4 128 aa7.14□□□□□ -1.27
CLIP3-204ENST00000590559 PHF5AQ7RTV0 110 aaKnown RBP7.14□□□□□ -1.27
CLIP3-204ENST00000590559 MUC2Q02817 5179 aa7.14□□□□□ -1.27
CLIP3-204ENST00000590559 TRBV24-1A0A075B6N3 115 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 TRAV13-1A0A0B4J241 112 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 PPP1R17O96001 155 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 FCER1GP30273 86 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 RPL32P62910 135 aaKnown RBP7.13□□□□□ -1.27
CLIP3-204ENST00000590559 SMAGPQ0VAQ4 97 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 C5orf38Q86SI9 138 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 KRTAP11-1Q8IUC1 163 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 OR10D4PQ8NGN7 298 aa7.13□□□□□ -1.27
CLIP3-204ENST00000590559 OPRPNQ99935 248 aaPredicted RBP7.13□□□□□ -1.27
CLIP3-204ENST00000590559 MRPL35Q9NZE8 188 aaKnown RBP7.13□□□□□ -1.27
CLIP3-204ENST00000590559 IGHV3OR16-9A0A0B4J2B5 98 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 F8WDY8 70 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 PPP1R2P9O14990 202 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 MT-ND6P03923 174 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 SRP19P09132 144 aaKnown RBP7.12□□□□□ -1.27
CLIP3-204ENST00000590559 TLX1NBP0CAT3 122 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 CEBPGP53567 150 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 RIGQ13278 110 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 MRPL51Q4U2R6 128 aaKnown RBP7.12□□□□□ -1.27
CLIP3-204ENST00000590559 C1orf137Q5JT78 98 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 FAM104BQ5XKR9 115 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 KIR2DL4Q99706 377 aa7.12□□□□□ -1.27
CLIP3-204ENST00000590559 ZNF727A8MUV8 499 aa7.11□□□□□ -1.27
CLIP3-204ENST00000590559 IGLV7-43P04211 117 aa7.11□□□□□ -1.27
CLIP3-204ENST00000590559 RPL18AQ02543 176 aaKnown RBP7.11□□□□□ -1.27
CLIP3-204ENST00000590559 SPAG11BQ08648 103 aa7.11□□□□□ -1.27
CLIP3-204ENST00000590559 KRTAP7-1Q8IUC3 87 aa7.11□□□□□ -1.27
CLIP3-204ENST00000590559 C20orf78Q9BR46 151 aa7.11□□□□□ -1.27
CLIP3-204ENST00000590559 LINC00862A6NCI5 91 aa7.1□□□□□ -1.27
CLIP3-204ENST00000590559 RPL39P62891 51 aaKnown RBP7.1□□□□□ -1.27
CLIP3-204ENST00000590559 C10orf25Q5T742 122 aa7.1□□□□□ -1.27
CLIP3-204ENST00000590559 EIF5A2Q9GZV4 153 aaKnown RBP7.1□□□□□ -1.27
CLIP3-204ENST00000590559 NAT8BQ9UHF3 227 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms