RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RNASEKQ6P5S7 137 aaKnown RBP6.82□□□□□ -1.32
LIG3-212ENST00000590181 FAM30AQ9NZY2 134 aa6.82□□□□□ -1.32
LIG3-212ENST00000590181 C7orf77A4D0Y5 90 aa6.81□□□□□ -1.32
LIG3-212ENST00000590181 FCER1GP30273 86 aa6.81□□□□□ -1.32
LIG3-212ENST00000590181 SUMO2P61956 95 aaKnown RBP6.81□□□□□ -1.32
LIG3-212ENST00000590181 SS18Q15532 418 aa6.81□□□□□ -1.32
LIG3-212ENST00000590181 SERTAD4-AS1Q5TG53 156 aa6.81□□□□□ -1.32
LIG3-212ENST00000590181 LINC00528Q8N1L1 170 aa6.81□□□□□ -1.32
LIG3-212ENST00000590181 DEFB104AQ8WTQ1 72 aa6.81□□□□□ -1.32
LIG3-212ENST00000590181 TIMM21Q9BVV7 248 aa6.81□□□□□ -1.32
LIG3-212ENST00000590181 IGHV3-64A0A075B6Q5 118 aa6.8□□□□□ -1.32
LIG3-212ENST00000590181 hDV102S1A0JD36 115 aa6.8□□□□□ -1.32
LIG3-212ENST00000590181 TSHBP01222 138 aa6.8□□□□□ -1.32
LIG3-212ENST00000590181 HBBP68871 147 aa6.8□□□□□ -1.32
LIG3-212ENST00000590181 AMN1Q8IY45 258 aa6.8□□□□□ -1.32
LIG3-212ENST00000590181 ANAPC16Q96DE5 110 aa6.8□□□□□ -1.32
LIG3-212ENST00000590181 LAMTOR2Q9Y2Q5 125 aa6.8□□□□□ -1.32
LIG3-212ENST00000590181 IGLV10-54A0A075B6I4 117 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 C1orf196B1AJZ1 125 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 C9JQL5 133 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 MT-ND4LP03901 98 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 CKS2P33552 79 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 CLPSL2Q6UWE3 100 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 SDIM1Q6ZPB5 146 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 ZNF664Q8N3J9 261 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 CHCHD10Q8WYQ3 142 aaPredicted RBP6.79□□□□□ -1.32
LIG3-212ENST00000590181 CDC42SE2Q9NRR3 84 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 LINC00474Q9P2X8 69 aa6.79□□□□□ -1.32
LIG3-212ENST00000590181 LINC00959A0A1B0GUT2 108 aa6.78□□□□□ -1.32
LIG3-212ENST00000590181 GAGE12HA6NDE8 117 aa6.78□□□□□ -1.32
LIG3-212ENST00000590181 RPS10P46783 165 aaKnown RBP6.78□□□□□ -1.32
LIG3-212ENST00000590181 CIRBPQ14011 172 aaKnown RBP6.78□□□□□ -1.32
LIG3-212ENST00000590181 CD164L2Q6UWJ8 174 aa6.78□□□□□ -1.32
LIG3-212ENST00000590181 SCXQ7RTU7 201 aa6.78□□□□□ -1.32
LIG3-212ENST00000590181 NRACQ8N912 160 aa6.78□□□□□ -1.32
LIG3-212ENST00000590181 CIRBP-AS1Q8TBR5 109 aa6.78□□□□□ -1.32
LIG3-212ENST00000590181 PLA2G2DQ9UNK4 145 aa6.78□□□□□ -1.32
LIG3-212ENST00000590181 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.77□□□□□ -1.33
LIG3-212ENST00000590181 IGHV1-58A0A0C4DH39 117 aa6.77□□□□□ -1.33
LIG3-212ENST00000590181 IGKV2-29A2NJV5 120 aaPredicted RBP6.77□□□□□ -1.33
LIG3-212ENST00000590181 CAMPP49913 170 aa6.77□□□□□ -1.33
LIG3-212ENST00000590181 SRSF3P84103 164 aaKnown RBP6.77□□□□□ -1.33
LIG3-212ENST00000590181 MRPL51Q4U2R6 128 aaKnown RBP6.77□□□□□ -1.33
LIG3-212ENST00000590181 UQCC3Q6UW78 93 aa6.77□□□□□ -1.33
LIG3-212ENST00000590181 IMMP2LQ96T52 175 aa6.77□□□□□ -1.33
LIG3-212ENST00000590181 TMEM242Q9NWH2 141 aa6.77□□□□□ -1.33
LIG3-212ENST00000590181 GVQW2A0A096LPI5 108 aaPredicted RBP6.76□□□□□ -1.33
LIG3-212ENST00000590181 A0A1B0GXF2 115 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 PRSS47A8MTI9 375 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 F8WDY8 70 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 K7EMI3 77 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 TNFRSF6BO95407 300 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 G0S2P27469 103 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 CLLU1Q5K131 121 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 SPANXA1Q9NS26 97 aa6.76□□□□□ -1.33
LIG3-212ENST00000590181 RAB5AP20339 215 aa6.75□□□□□ -1.33
LIG3-212ENST00000590181 FOXI1Q12951 378 aa6.75□□□□□ -1.33
LIG3-212ENST00000590181 ORMDL3Q8N138 153 aa6.75□□□□□ -1.33
LIG3-212ENST00000590181 DPH3Q96FX2 82 aa6.75□□□□□ -1.33
LIG3-212ENST00000590181 TRAV9-1A0A075B6T8 112 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 IGKV3OR2-268A0A0C4DH90 116 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 APOMO95445 188 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 NPSP0C0P6 89 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 MRPS36P82909 103 aaKnown RBP6.74□□□□□ -1.33
LIG3-212ENST00000590181 LINC01620Q4KN68 170 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 TMEM136Q6ZRR5 245 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 C15orf56Q8N910 161 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 SMIM2Q9BVW6 85 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 UBE2D4Q9Y2X8 147 aa6.74□□□□□ -1.33
LIG3-212ENST00000590181 D6R8Y8 96 aa6.73□□□□□ -1.33
LIG3-212ENST00000590181 ZNF561-AS1K7EIQ3 104 aa6.73□□□□□ -1.33
LIG3-212ENST00000590181 COX7A2LO14548 114 aa6.73□□□□□ -1.33
LIG3-212ENST00000590181 GAS8-AS1O95177 125 aa6.73□□□□□ -1.33
LIG3-212ENST00000590181 MRPL54Q6P161 138 aaKnown RBP6.73□□□□□ -1.33
LIG3-212ENST00000590181 CTDSP1Q9GZU7 261 aa6.73□□□□□ -1.33
LIG3-212ENST00000590181 PYGO1Q9Y3Y4 419 aa6.73□□□□□ -1.33
LIG3-212ENST00000590181 LINC01549A6NIU2 74 aa6.72□□□□□ -1.33
LIG3-212ENST00000590181 SMKR1H3BMG3 65 aa6.72□□□□□ -1.33
LIG3-212ENST00000590181 OXTP01178 125 aa6.72□□□□□ -1.33
LIG3-212ENST00000590181 MALP21145 153 aa6.72□□□□□ -1.33
LIG3-212ENST00000590181 XCL1P47992 114 aa6.72□□□□□ -1.33
LIG3-212ENST00000590181 C2orf48Q96LS8 159 aa6.72□□□□□ -1.33
LIG3-212ENST00000590181 PRELID3AQ96N28 172 aa6.72□□□□□ -1.33
LIG3-212ENST00000590181 RPL37AP61513 92 aaKnown RBP6.71□□□□□ -1.34
LIG3-212ENST00000590181 PLAC8Q9NZF1 115 aa6.71□□□□□ -1.34
LIG3-212ENST00000590181 SLPIP03973 132 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 IFI27P40305 119 aaPredicted RBP6.7□□□□□ -1.34
LIG3-212ENST00000590181 KRTAP10-4P60372 401 aaPredicted RBP6.7□□□□□ -1.34
LIG3-212ENST00000590181 RNF151Q2KHN1 245 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 COX19Q49B96 90 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 PAPPA-AS1Q5QFB9 102 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 OR10D4PQ8NGN7 298 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 SPACA4Q8TDM5 124 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 C7orf33Q8WU49 177 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 MAP1LC3AQ9H492 121 aa6.7□□□□□ -1.34
LIG3-212ENST00000590181 NXT2Q9NPJ8 142 aaKnown RBP6.7□□□□□ -1.34
LIG3-212ENST00000590181 IGLV4-69A0A075B6H9 119 aa6.69□□□□□ -1.34
LIG3-212ENST00000590181 SYCNQ0VAF6 134 aa6.69□□□□□ -1.34
LIG3-212ENST00000590181 ORMDL2Q53FV1 153 aa6.69□□□□□ -1.34
LIG3-212ENST00000590181 CARD19Q96LW7 228 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms