RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 SYCNQ0VAF6 134 aa11.32□□□□□ -0.6
CCDC43-204ENST00000588687 MRPL52Q86TS9 123 aaKnown RBP11.32□□□□□ -0.6
CCDC43-204ENST00000588687 CDC42SE2Q9NRR3 84 aa11.32□□□□□ -0.6
CCDC43-204ENST00000588687 TMEM242Q9NWH2 141 aa11.32□□□□□ -0.6
CCDC43-204ENST00000588687 CD164L2Q6UWJ8 174 aa11.31□□□□□ -0.6
CCDC43-204ENST00000588687 A0A1W2PNN7 141 aa11.3□□□□□ -0.6
CCDC43-204ENST00000588687 CAMPP49913 170 aa11.3□□□□□ -0.6
CCDC43-204ENST00000588687 EIF5AL1Q6IS14 154 aaKnown RBP11.3□□□□□ -0.6
CCDC43-204ENST00000588687 TMEM101Q96IK0 257 aa11.3□□□□□ -0.6
CCDC43-204ENST00000588687 BTF3L4Q96K17 158 aa11.3□□□□□ -0.6
CCDC43-204ENST00000588687 MUC2Q02817 5179 aa11.3□□□□□ -0.6
CCDC43-204ENST00000588687 PMCHP20382 165 aa11.29□□□□□ -0.6
CCDC43-204ENST00000588687 SMIM15Q7Z3B0 74 aa11.29□□□□□ -0.6
CCDC43-204ENST00000588687 MRAP2Q96G30 205 aa11.29□□□□□ -0.6
CCDC43-204ENST00000588687 POLR2KP53803 58 aaKnown RBP11.28□□□□□ -0.6
CCDC43-204ENST00000588687 IGLV4-69A0A075B6H9 119 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 TRBV27A0A0K0K1C4 114 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 ZNF561-AS1K7EIQ3 104 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 TAGLN2P37802 199 aaKnown RBP11.27□□□□□ -0.61
CCDC43-204ENST00000588687 SS18Q15532 418 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 FAM231DQ6ZW35 169 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 ZNF664Q8N3J9 261 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 NUP35Q8NFH5 326 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 FAM210AQ96ND0 272 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 PSORS1C2Q9UIG4 136 aa11.27□□□□□ -0.61
CCDC43-204ENST00000588687 LOC107984640A0A0U1RRK4 108 aa11.26□□□□□ -0.61
CCDC43-204ENST00000588687 ST20Q9HBF5 79 aa11.26□□□□□ -0.61
CCDC43-204ENST00000588687 C7orf77A4D0Y5 90 aa11.25□□□□□ -0.61
CCDC43-204ENST00000588687 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.25□□□□□ -0.61
CCDC43-204ENST00000588687 GAGE2BQ13066 116 aa11.25□□□□□ -0.61
CCDC43-204ENST00000588687 CT83Q5H943 113 aa11.25□□□□□ -0.61
CCDC43-204ENST00000588687 GATCO43716 136 aaKnown RBP11.24□□□□□ -0.61
CCDC43-204ENST00000588687 A8MWL6 223 aa11.23□□□□□ -0.61
CCDC43-204ENST00000588687 APOMO95445 188 aa11.23□□□□□ -0.61
CCDC43-204ENST00000588687 C9orf116Q5BN46 136 aaPredicted RBP11.23□□□□□ -0.61
CCDC43-204ENST00000588687 ISOC2Q96AB3 205 aa11.23□□□□□ -0.61
CCDC43-204ENST00000588687 TMEM191AQ9H0A3 160 aa11.23□□□□□ -0.61
CCDC43-204ENST00000588687 TMEM250H0YL14 139 aa11.22□□□□□ -0.61
CCDC43-204ENST00000588687 COX7A2LO14548 114 aa11.22□□□□□ -0.61
CCDC43-204ENST00000588687 UBE2D4Q9Y2X8 147 aa11.22□□□□□ -0.61
CCDC43-204ENST00000588687 CSDC2Q9Y534 153 aaKnown RBP11.22□□□□□ -0.61
CCDC43-204ENST00000588687 C1orf196B1AJZ1 125 aa11.21□□□□□ -0.61
CCDC43-204ENST00000588687 RAB4AP20338 218 aa11.21□□□□□ -0.61
CCDC43-204ENST00000588687 SLC51BQ86UW2 128 aa11.21□□□□□ -0.61
CCDC43-204ENST00000588687 C2orf48Q96LS8 159 aa11.21□□□□□ -0.61
CCDC43-204ENST00000588687 CAMK2N2Q96S95 79 aa11.21□□□□□ -0.61
CCDC43-204ENST00000588687 HIGD1CA8MV81 97 aa11.2□□□□□ -0.62
CCDC43-204ENST00000588687 RNASE13Q5GAN3 156 aaKnown RBP11.2□□□□□ -0.62
CCDC43-204ENST00000588687 PHF5AQ7RTV0 110 aaKnown RBP11.2□□□□□ -0.62
CCDC43-204ENST00000588687 AMN1Q8IY45 258 aa11.2□□□□□ -0.62
CCDC43-204ENST00000588687 A0A1B0GUT8 65 aa11.19□□□□□ -0.62
CCDC43-204ENST00000588687 MT-ND6P03923 174 aa11.19□□□□□ -0.62
CCDC43-204ENST00000588687 MALP21145 153 aa11.19□□□□□ -0.62
CCDC43-204ENST00000588687 Q6ZUT4 128 aa11.19□□□□□ -0.62
CCDC43-204ENST00000588687 NRACQ8N912 160 aa11.19□□□□□ -0.62
CCDC43-204ENST00000588687 SMKR1H3BMG3 65 aa11.18□□□□□ -0.62
CCDC43-204ENST00000588687 C1orf137Q5JT78 98 aa11.18□□□□□ -0.62
CCDC43-204ENST00000588687 KRTAP11-1Q8IUC1 163 aa11.18□□□□□ -0.62
CCDC43-204ENST00000588687 TCTE3Q8IZS6 198 aa11.18□□□□□ -0.62
CCDC43-204ENST00000588687 TSKUQ8WUA8 353 aa11.18□□□□□ -0.62
CCDC43-204ENST00000588687 RPL18AQ02543 176 aaKnown RBP11.17□□□□□ -0.62
CCDC43-204ENST00000588687 PRR26Q8N8Z3 221 aa11.17□□□□□ -0.62
CCDC43-204ENST00000588687 FAM104AQ969W3 186 aa11.17□□□□□ -0.62
CCDC43-204ENST00000588687 TRAV13-1A0A0B4J241 112 aa11.16□□□□□ -0.62
CCDC43-204ENST00000588687 SPAG11BQ08648 103 aa11.16□□□□□ -0.62
CCDC43-204ENST00000588687 RNF151Q2KHN1 245 aa11.16□□□□□ -0.62
CCDC43-204ENST00000588687 C5orf38Q86SI9 138 aa11.16□□□□□ -0.62
CCDC43-204ENST00000588687 LINC01551Q86U37 167 aa11.16□□□□□ -0.62
CCDC43-204ENST00000588687 BORCS7Q96B45 105 aa11.16□□□□□ -0.62
CCDC43-204ENST00000588687 OPRPNQ99935 248 aaPredicted RBP11.16□□□□□ -0.62
CCDC43-204ENST00000588687 VCYO14598 125 aa11.15□□□□□ -0.62
CCDC43-204ENST00000588687 IGLV7-43P04211 117 aa11.15□□□□□ -0.62
CCDC43-204ENST00000588687 SUMO2P61956 95 aaKnown RBP11.15□□□□□ -0.62
CCDC43-204ENST00000588687 FCER1GP30273 86 aa11.14□□□□□ -0.63
CCDC43-204ENST00000588687 TIMM21Q9BVV7 248 aa11.14□□□□□ -0.63
CCDC43-204ENST00000588687 FAM168BA1KXE4 195 aa11.13□□□□□ -0.63
CCDC43-204ENST00000588687 KRTAP1-4P0C5Y4 121 aa11.13□□□□□ -0.63
CCDC43-204ENST00000588687 OR10D4PQ8NGN7 298 aa11.13□□□□□ -0.63
CCDC43-204ENST00000588687 MRPL35Q9NZE8 188 aaKnown RBP11.13□□□□□ -0.63
CCDC43-204ENST00000588687 H0Y9J4 135 aa11.12□□□□□ -0.63
CCDC43-204ENST00000588687 KRTAP7-1Q8IUC3 87 aa11.12□□□□□ -0.63
CCDC43-204ENST00000588687 DIRC1Q969H9 104 aa11.12□□□□□ -0.63
CCDC43-204ENST00000588687 OSTCQ9NRP0 149 aa11.12□□□□□ -0.63
CCDC43-204ENST00000588687 V9GYV3 84 aa11.12□□□□□ -0.63
CCDC43-204ENST00000588687 IGHV3OR16-9A0A0B4J2B5 98 aa11.11□□□□□ -0.63
CCDC43-204ENST00000588687 C10orf25Q5T742 122 aa11.11□□□□□ -0.63
CCDC43-204ENST00000588687 KIR2DL4Q99706 377 aa11.11□□□□□ -0.63
CCDC43-204ENST00000588687 SMIM7Q9BQ49 75 aa11.11□□□□□ -0.63
CCDC43-204ENST00000588687 TLX1NBP0CAT3 122 aa11.1□□□□□ -0.63
CCDC43-204ENST00000588687 CEBPGP53567 150 aa11.1□□□□□ -0.63
CCDC43-204ENST00000588687 ALKAL2Q6UX46 152 aa11.1□□□□□ -0.63
CCDC43-204ENST00000588687 PPP1R17O96001 155 aa11.09□□□□□ -0.63
CCDC43-204ENST00000588687 SMAGPQ0VAQ4 97 aa11.09□□□□□ -0.63
CCDC43-204ENST00000588687 RPL39P62891 51 aaKnown RBP11.08□□□□□ -0.64
CCDC43-204ENST00000588687 BLOC1S1P78537 153 aa11.08□□□□□ -0.64
CCDC43-204ENST00000588687 MRPL51Q4U2R6 128 aaKnown RBP11.08□□□□□ -0.64
CCDC43-204ENST00000588687 ORAOV1Q8WV07 137 aa11.08□□□□□ -0.64
CCDC43-204ENST00000588687 C6orf48Q9UBA6 75 aa11.08□□□□□ -0.64
CCDC43-204ENST00000588687 IGLV1-50A0A075B6I6 118 aa11.07□□□□□ -0.64
CCDC43-204ENST00000588687 F8WDY8 70 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms