RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SMIM7Q9BQ49 75 aa11.8□□□□□ -0.52
CLN3-218ENST00000565688 TMEM242Q9NWH2 141 aa11.8□□□□□ -0.52
CLN3-218ENST00000565688 UBR4Q5T4S7 5183 aa11.79□□□□□ -0.52
CLN3-218ENST00000565688 IGHV1-58A0A0C4DH39 117 aa11.79□□□□□ -0.52
CLN3-218ENST00000565688 CCL25O15444 150 aa11.79□□□□□ -0.52
CLN3-218ENST00000565688 SS18Q15532 418 aa11.79□□□□□ -0.52
CLN3-218ENST00000565688 MRPL52Q86TS9 123 aaKnown RBP11.79□□□□□ -0.52
CLN3-218ENST00000565688 LINC01551Q86U37 167 aa11.79□□□□□ -0.52
CLN3-218ENST00000565688 STPG4Q8N801 248 aa11.79□□□□□ -0.52
CLN3-218ENST00000565688 EIF5A2Q9GZV4 153 aaKnown RBP11.79□□□□□ -0.52
CLN3-218ENST00000565688 TRBV27A0A0K0K1C4 114 aa11.78□□□□□ -0.52
CLN3-218ENST00000565688 POLR2KP53803 58 aaKnown RBP11.78□□□□□ -0.52
CLN3-218ENST00000565688 A0A096LNI7 61 aa11.77□□□□□ -0.53
CLN3-218ENST00000565688 GAS8-AS1O95177 125 aa11.77□□□□□ -0.53
CLN3-218ENST00000565688 RAB4AP20338 218 aa11.77□□□□□ -0.53
CLN3-218ENST00000565688 OSTCQ9NRP0 149 aa11.77□□□□□ -0.53
CLN3-218ENST00000565688 CDC42SE2Q9NRR3 84 aa11.77□□□□□ -0.53
CLN3-218ENST00000565688 C7orf77A4D0Y5 90 aa11.76□□□□□ -0.53
CLN3-218ENST00000565688 ZNF727A8MUV8 499 aa11.76□□□□□ -0.53
CLN3-218ENST00000565688 PRR3P79522 188 aaKnown RBP11.76□□□□□ -0.53
CLN3-218ENST00000565688 CD164L2Q6UWJ8 174 aa11.76□□□□□ -0.53
CLN3-218ENST00000565688 ZNF664Q8N3J9 261 aa11.76□□□□□ -0.53
CLN3-218ENST00000565688 CARD19Q96LW7 228 aa11.76□□□□□ -0.53
CLN3-218ENST00000565688 PPP1R17O96001 155 aa11.75□□□□□ -0.53
CLN3-218ENST00000565688 SMAGPQ0VAQ4 97 aa11.75□□□□□ -0.53
CLN3-218ENST00000565688 ZNF561-AS1K7EIQ3 104 aa11.74□□□□□ -0.53
CLN3-218ENST00000565688 VCYO14598 125 aa11.74□□□□□ -0.53
CLN3-218ENST00000565688 RIGQ13278 110 aa11.74□□□□□ -0.53
CLN3-218ENST00000565688 AMN1Q8IY45 258 aa11.74□□□□□ -0.53
CLN3-218ENST00000565688 FCER1GP30273 86 aa11.73□□□□□ -0.53
CLN3-218ENST00000565688 C1orf196B1AJZ1 125 aa11.72□□□□□ -0.53
CLN3-218ENST00000565688 SYCNQ0VAF6 134 aa11.72□□□□□ -0.53
CLN3-218ENST00000565688 ISOC2Q96AB3 205 aa11.72□□□□□ -0.53
CLN3-218ENST00000565688 LINC00526Q96FQ7 95 aa11.72□□□□□ -0.53
CLN3-218ENST00000565688 CSDC2Q9Y534 153 aaKnown RBP11.72□□□□□ -0.53
CLN3-218ENST00000565688 SRP19P09132 144 aaKnown RBP11.71□□□□□ -0.53
CLN3-218ENST00000565688 KIR2DL4Q99706 377 aa11.71□□□□□ -0.53
CLN3-218ENST00000565688 V9GYV3 84 aa11.71□□□□□ -0.53
CLN3-218ENST00000565688 hCG_2014768A0A024R1R8 64 aa11.7□□□□□ -0.54
CLN3-218ENST00000565688 CAMPP49913 170 aa11.7□□□□□ -0.54
CLN3-218ENST00000565688 SUMO2P61956 95 aaKnown RBP11.7□□□□□ -0.54
CLN3-218ENST00000565688 NUP35Q8NFH5 326 aa11.7□□□□□ -0.54
CLN3-218ENST00000565688 LINC01600Q96MT4 127 aa11.7□□□□□ -0.54
CLN3-218ENST00000565688 SMKR1H3BMG3 65 aa11.69□□□□□ -0.54
CLN3-218ENST00000565688 COX7A2LO14548 114 aa11.69□□□□□ -0.54
CLN3-218ENST00000565688 PPP1R2P9O14990 202 aa11.69□□□□□ -0.54
CLN3-218ENST00000565688 MALP21145 153 aa11.69□□□□□ -0.54
CLN3-218ENST00000565688 FAM74A3Q4VXF1 159 aa11.69□□□□□ -0.54
CLN3-218ENST00000565688 NRACQ8N912 160 aa11.69□□□□□ -0.54
CLN3-218ENST00000565688 NAT8BQ9UHF3 227 aa11.69□□□□□ -0.54
CLN3-218ENST00000565688 TMEM241Q24JQ0 296 aa11.68□□□□□ -0.54
CLN3-218ENST00000565688 UBE2D4Q9Y2X8 147 aa11.68□□□□□ -0.54
CLN3-218ENST00000565688 LOC107984640A0A0U1RRK4 108 aa11.67□□□□□ -0.54
CLN3-218ENST00000565688 PTTG1IPP53801 180 aa11.67□□□□□ -0.54
CLN3-218ENST00000565688 SPINK6Q6UWN8 80 aa11.67□□□□□ -0.54
CLN3-218ENST00000565688 Q6ZRP5 223 aa11.67□□□□□ -0.54
CLN3-218ENST00000565688 TMEM18Q96B42 140 aa11.67□□□□□ -0.54
CLN3-218ENST00000565688 IGLV4-69A0A075B6H9 119 aa11.66□□□□□ -0.54
CLN3-218ENST00000565688 REG3GQ6UW15 175 aa11.66□□□□□ -0.54
CLN3-218ENST00000565688 TIMM21Q9BVV7 248 aa11.66□□□□□ -0.54
CLN3-218ENST00000565688 FAM104BQ5XKR9 115 aa11.65□□□□□ -0.54
CLN3-218ENST00000565688 TRAV13-1A0A0B4J241 112 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 A0A1B0GW15 77 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 LINC00862A6NCI5 91 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 TCAPO15273 167 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 APOMO95445 188 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 RPL23P62829 140 aaKnown RBP11.64□□□□□ -0.55
CLN3-218ENST00000565688 GAGE2BQ13066 116 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 MRPL51Q4U2R6 128 aaKnown RBP11.64□□□□□ -0.55
CLN3-218ENST00000565688 C2orf48Q96LS8 159 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 CAMK2N2Q96S95 79 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 C20orf78Q9BR46 151 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 TNXBP22105 4242 aa11.64□□□□□ -0.55
CLN3-218ENST00000565688 A0A0J9YXV3 536 aa11.63□□□□□ -0.55
CLN3-218ENST00000565688 SMIM27A0A1W2PRY6 76 aa11.63□□□□□ -0.55
CLN3-218ENST00000565688 RPL32P62910 135 aaKnown RBP11.63□□□□□ -0.55
CLN3-218ENST00000565688 ADIRFQ15847 76 aa11.63□□□□□ -0.55
CLN3-218ENST00000565688 RNASE13Q5GAN3 156 aaKnown RBP11.63□□□□□ -0.55
CLN3-218ENST00000565688 TRBV24-1A0A075B6N3 115 aa11.62□□□□□ -0.55
CLN3-218ENST00000565688 Q6ZUT4 128 aa11.62□□□□□ -0.55
CLN3-218ENST00000565688 NAT8Q9UHE5 227 aa11.62□□□□□ -0.55
CLN3-218ENST00000565688 CKS2P33552 79 aa11.61□□□□□ -0.55
CLN3-218ENST00000565688 SRSF9Q13242 221 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLN3-218ENST00000565688 C5orf38Q86SI9 138 aa11.6□□□□□ -0.55
CLN3-218ENST00000565688 S100A8P05109 93 aa11.59□□□□□ -0.55
CLN3-218ENST00000565688 RNF151Q2KHN1 245 aa11.59□□□□□ -0.55
CLN3-218ENST00000565688 OR10D4PQ8NGN7 298 aa11.59□□□□□ -0.55
CLN3-218ENST00000565688 A0A1W2PNN7 141 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 F8W036 122 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.58□□□□□ -0.56
CLN3-218ENST00000565688 TNFRSF6BO95407 300 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 KRTAP10-8P60410 259 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 SPAG11BQ08648 103 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 PEA15Q15121 130 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 SMDT1Q9H4I9 107 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 SPANXA1Q9NS26 97 aa11.58□□□□□ -0.56
CLN3-218ENST00000565688 C9JQL5 133 aa11.57□□□□□ -0.56
CLN3-218ENST00000565688 F8WDY8 70 aa11.57□□□□□ -0.56
CLN3-218ENST00000565688 RPL18AQ02543 176 aaKnown RBP11.57□□□□□ -0.56
CLN3-218ENST00000565688 SMIM2Q9BVW6 85 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms