RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ZNF727A8MUV8 499 aa11.97□□□□□ -0.49
VPS35-202ENST00000561713 CCL25O15444 150 aa11.97□□□□□ -0.49
VPS35-202ENST00000561713 ESDP10768 282 aa11.97□□□□□ -0.49
VPS35-202ENST00000561713 ZNF25P17030 456 aaPredicted RBP11.97□□□□□ -0.49
VPS35-202ENST00000561713 TSKUQ8WUA8 353 aa11.97□□□□□ -0.49
VPS35-202ENST00000561713 MRAP2Q96G30 205 aa11.97□□□□□ -0.49
VPS35-202ENST00000561713 BTF3L4Q96K17 158 aa11.97□□□□□ -0.49
VPS35-202ENST00000561713 A0A096LNI7 61 aa11.96□□□□□ -0.49
VPS35-202ENST00000561713 NDUFS6O75380 124 aaKnown RBP11.96□□□□□ -0.49
VPS35-202ENST00000561713 SRP19P09132 144 aaKnown RBP11.96□□□□□ -0.49
VPS35-202ENST00000561713 TMEM101Q96IK0 257 aa11.96□□□□□ -0.49
VPS35-202ENST00000561713 FAM210AQ96ND0 272 aa11.96□□□□□ -0.49
VPS35-202ENST00000561713 LINC00959A0A1B0GUT2 108 aa11.95□□□□□ -0.5
VPS35-202ENST00000561713 TMEM191AQ9H0A3 160 aa11.95□□□□□ -0.5
VPS35-202ENST00000561713 RAB4AP20338 218 aa11.94□□□□□ -0.5
VPS35-202ENST00000561713 OSTCQ9NRP0 149 aa11.94□□□□□ -0.5
VPS35-202ENST00000561713 V9GYV3 84 aa11.94□□□□□ -0.5
VPS35-202ENST00000561713 C7orf77A4D0Y5 90 aa11.93□□□□□ -0.5
VPS35-202ENST00000561713 POLR2KP53803 58 aaKnown RBP11.93□□□□□ -0.5
VPS35-202ENST00000561713 RNASE13Q5GAN3 156 aaKnown RBP11.93□□□□□ -0.5
VPS35-202ENST00000561713 STPG4Q8N801 248 aa11.93□□□□□ -0.5
VPS35-202ENST00000561713 C7orf33Q8WU49 177 aa11.93□□□□□ -0.5
VPS35-202ENST00000561713 ODF1Q14990 250 aa11.92□□□□□ -0.5
VPS35-202ENST00000561713 NUP35Q8NFH5 326 aa11.92□□□□□ -0.5
VPS35-202ENST00000561713 TRBV27A0A0K0K1C4 114 aa11.91□□□□□ -0.5
VPS35-202ENST00000561713 ISOC2Q96AB3 205 aa11.91□□□□□ -0.5
VPS35-202ENST00000561713 CARD19Q96LW7 228 aa11.91□□□□□ -0.5
VPS35-202ENST00000561713 CDC42SE2Q9NRR3 84 aa11.91□□□□□ -0.5
VPS35-202ENST00000561713 IGHV1-58A0A0C4DH39 117 aa11.9□□□□□ -0.5
VPS35-202ENST00000561713 A0A1B0GVG6 124 aa11.9□□□□□ -0.5
VPS35-202ENST00000561713 PRR3P79522 188 aaKnown RBP11.9□□□□□ -0.5
VPS35-202ENST00000561713 MRPL52Q86TS9 123 aaKnown RBP11.9□□□□□ -0.5
VPS35-202ENST00000561713 NRACQ8N912 160 aa11.9□□□□□ -0.5
VPS35-202ENST00000561713 FCER1GP30273 86 aa11.89□□□□□ -0.51
VPS35-202ENST00000561713 SS18Q15532 418 aa11.89□□□□□ -0.51
VPS35-202ENST00000561713 ADIRFQ15847 76 aa11.89□□□□□ -0.51
VPS35-202ENST00000561713 ZNF664Q8N3J9 261 aa11.89□□□□□ -0.51
VPS35-202ENST00000561713 C9JQL5 133 aa11.88□□□□□ -0.51
VPS35-202ENST00000561713 RPL23P62829 140 aaKnown RBP11.88□□□□□ -0.51
VPS35-202ENST00000561713 RIGQ13278 110 aa11.88□□□□□ -0.51
VPS35-202ENST00000561713 Q6ZUT4 128 aa11.88□□□□□ -0.51
VPS35-202ENST00000561713 SUMO2P61956 95 aaKnown RBP11.87□□□□□ -0.51
VPS35-202ENST00000561713 CD164L2Q6UWJ8 174 aa11.87□□□□□ -0.51
VPS35-202ENST00000561713 LINC01600Q96MT4 127 aa11.87□□□□□ -0.51
VPS35-202ENST00000561713 MRPL51Q4U2R6 128 aaKnown RBP11.86□□□□□ -0.51
VPS35-202ENST00000561713 UBE2D4Q9Y2X8 147 aa11.86□□□□□ -0.51
VPS35-202ENST00000561713 ZNF561-AS1K7EIQ3 104 aa11.85□□□□□ -0.51
VPS35-202ENST00000561713 CAMPP49913 170 aa11.85□□□□□ -0.51
VPS35-202ENST00000561713 SRSF3P84103 164 aaKnown RBP11.85□□□□□ -0.51
VPS35-202ENST00000561713 SYCNQ0VAF6 134 aa11.85□□□□□ -0.51
VPS35-202ENST00000561713 TMEM241Q24JQ0 296 aa11.85□□□□□ -0.51
VPS35-202ENST00000561713 NAT8BQ9UHF3 227 aa11.85□□□□□ -0.51
VPS35-202ENST00000561713 IGLV4-69A0A075B6H9 119 aa11.84□□□□□ -0.51
VPS35-202ENST00000561713 TRAV13-1A0A0B4J241 112 aa11.84□□□□□ -0.51
VPS35-202ENST00000561713 VCYO14598 125 aa11.84□□□□□ -0.51
VPS35-202ENST00000561713 COX7A2LO14548 114 aa11.82□□□□□ -0.52
VPS35-202ENST00000561713 MALP21145 153 aa11.82□□□□□ -0.52
VPS35-202ENST00000561713 GAGE2BQ13066 116 aa11.82□□□□□ -0.52
VPS35-202ENST00000561713 FAM74A3Q4VXF1 159 aa11.82□□□□□ -0.52
VPS35-202ENST00000561713 FAM104BQ5XKR9 115 aa11.82□□□□□ -0.52
VPS35-202ENST00000561713 KIR2DL4Q99706 377 aa11.82□□□□□ -0.52
VPS35-202ENST00000561713 NAT8Q9UHE5 227 aa11.82□□□□□ -0.52
VPS35-202ENST00000561713 RPL39P62891 51 aaKnown RBP11.81□□□□□ -0.52
VPS35-202ENST00000561713 MRPL54Q6P161 138 aaKnown RBP11.81□□□□□ -0.52
VPS35-202ENST00000561713 C5orf38Q86SI9 138 aa11.81□□□□□ -0.52
VPS35-202ENST00000561713 SMIM27A0A1W2PRY6 76 aa11.8□□□□□ -0.52
VPS35-202ENST00000561713 PTTG1IPP53801 180 aa11.8□□□□□ -0.52
VPS35-202ENST00000561713 C1orf196B1AJZ1 125 aa11.79□□□□□ -0.52
VPS35-202ENST00000561713 PPP1R2P9O14990 202 aa11.79□□□□□ -0.52
VPS35-202ENST00000561713 PPP1R17O96001 155 aa11.79□□□□□ -0.52
VPS35-202ENST00000561713 CAMK2N2Q96S95 79 aa11.79□□□□□ -0.52
VPS35-202ENST00000561713 LINC00474Q9P2X8 69 aa11.79□□□□□ -0.52
VPS35-202ENST00000561713 PKIGQ9Y2B9 76 aa11.79□□□□□ -0.52
VPS35-202ENST00000561713 D6R8Y8 96 aa11.78□□□□□ -0.52
VPS35-202ENST00000561713 CKS2P33552 79 aa11.78□□□□□ -0.52
VPS35-202ENST00000561713 CSDC2Q9Y534 153 aaKnown RBP11.78□□□□□ -0.52
VPS35-202ENST00000561713 A0A0J9YXV3 536 aa11.77□□□□□ -0.53
VPS35-202ENST00000561713 LOC107984640A0A0U1RRK4 108 aa11.77□□□□□ -0.53
VPS35-202ENST00000561713 NPYP01303 97 aa11.77□□□□□ -0.53
VPS35-202ENST00000561713 KRTAP10-8P60410 259 aa11.77□□□□□ -0.53
VPS35-202ENST00000561713 RPL18AQ02543 176 aaKnown RBP11.77□□□□□ -0.53
VPS35-202ENST00000561713 SPAG11BQ08648 103 aa11.77□□□□□ -0.53
VPS35-202ENST00000561713 OPRPNQ99935 248 aaPredicted RBP11.77□□□□□ -0.53
VPS35-202ENST00000561713 SMIM2Q9BVW6 85 aa11.77□□□□□ -0.53
VPS35-202ENST00000561713 TNFRSF6BO95407 300 aa11.76□□□□□ -0.53
VPS35-202ENST00000561713 FAM104AQ969W3 186 aa11.76□□□□□ -0.53
VPS35-202ENST00000561713 A0A1W2PNN7 141 aa11.75□□□□□ -0.53
VPS35-202ENST00000561713 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.75□□□□□ -0.53
VPS35-202ENST00000561713 SMAGPQ0VAQ4 97 aa11.75□□□□□ -0.53
VPS35-202ENST00000561713 C20orf78Q9BR46 151 aa11.75□□□□□ -0.53
VPS35-202ENST00000561713 LPAP08519 4548 aa11.75□□□□□ -0.53
VPS35-202ENST00000561713 A0A1B0GXF2 115 aa11.74□□□□□ -0.53
VPS35-202ENST00000561713 TCAPO15273 167 aa11.74□□□□□ -0.53
VPS35-202ENST00000561713 APOMO95445 188 aa11.74□□□□□ -0.53
VPS35-202ENST00000561713 HBBP68871 147 aa11.74□□□□□ -0.53
VPS35-202ENST00000561713 PEA15Q15121 130 aa11.74□□□□□ -0.53
VPS35-202ENST00000561713 TMEM18Q96B42 140 aa11.74□□□□□ -0.53
VPS35-202ENST00000561713 TIMM21Q9BVV7 248 aa11.74□□□□□ -0.53
VPS35-202ENST00000561713 TRBV24-1A0A075B6N3 115 aa11.73□□□□□ -0.53
VPS35-202ENST00000561713 ORAOV1Q8WV07 137 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms