RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 POLR2KP53803 58 aaKnown RBP10.1□□□□□ -0.79
CLN3-208ENST00000561505 SYCNQ0VAF6 134 aa10.1□□□□□ -0.79
CLN3-208ENST00000561505 LINC00526Q96FQ7 95 aa10.1□□□□□ -0.79
CLN3-208ENST00000561505 FAM231DQ6ZW35 169 aa10.09□□□□□ -0.79
CLN3-208ENST00000561505 BTF3L4Q96K17 158 aa10.09□□□□□ -0.79
CLN3-208ENST00000561505 TRBV27A0A0K0K1C4 114 aa10.08□□□□□ -0.8
CLN3-208ENST00000561505 PMCHP20382 165 aa10.08□□□□□ -0.8
CLN3-208ENST00000561505 SMIM15Q7Z3B0 74 aa10.08□□□□□ -0.8
CLN3-208ENST00000561505 TMEM101Q96IK0 257 aa10.08□□□□□ -0.8
CLN3-208ENST00000561505 A0A1W2PNN7 141 aa10.07□□□□□ -0.8
CLN3-208ENST00000561505 GAS8-AS1O95177 125 aa10.07□□□□□ -0.8
CLN3-208ENST00000561505 SS18Q15532 418 aa10.07□□□□□ -0.8
CLN3-208ENST00000561505 ZNF664Q8N3J9 261 aa10.07□□□□□ -0.8
CLN3-208ENST00000561505 CSDC2Q9Y534 153 aaKnown RBP10.07□□□□□ -0.8
CLN3-208ENST00000561505 LOC107984640A0A0U1RRK4 108 aa10.06□□□□□ -0.8
CLN3-208ENST00000561505 ZNF561-AS1K7EIQ3 104 aa10.06□□□□□ -0.8
CLN3-208ENST00000561505 CAMPP49913 170 aa10.06□□□□□ -0.8
CLN3-208ENST00000561505 CT83Q5H943 113 aa10.06□□□□□ -0.8
CLN3-208ENST00000561505 NUP35Q8NFH5 326 aa10.06□□□□□ -0.8
CLN3-208ENST00000561505 A8MWL6 223 aa10.05□□□□□ -0.8
CLN3-208ENST00000561505 MRAP2Q96G30 205 aa10.05□□□□□ -0.8
CLN3-208ENST00000561505 IGLV4-69A0A075B6H9 119 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 TMEM250H0YL14 139 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 ISOC2Q96AB3 205 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 C2orf48Q96LS8 159 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 TMEM191AQ9H0A3 160 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 ST20Q9HBF5 79 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 TMEM242Q9NWH2 141 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 PSORS1C2Q9UIG4 136 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 LPAP08519 4548 aa10.04□□□□□ -0.8
CLN3-208ENST00000561505 C1orf196B1AJZ1 125 aa10.03□□□□□ -0.8
CLN3-208ENST00000561505 GATCO43716 136 aaKnown RBP10.03□□□□□ -0.8
CLN3-208ENST00000561505 C7orf77A4D0Y5 90 aa10.02□□□□□ -0.81
CLN3-208ENST00000561505 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.02□□□□□ -0.81
CLN3-208ENST00000561505 RAB4AP20338 218 aa10.02□□□□□ -0.81
CLN3-208ENST00000561505 RNF151Q2KHN1 245 aa10.02□□□□□ -0.81
CLN3-208ENST00000561505 APOMO95445 188 aa10.01□□□□□ -0.81
CLN3-208ENST00000561505 GAGE2BQ13066 116 aa10.01□□□□□ -0.81
CLN3-208ENST00000561505 C9orf116Q5BN46 136 aaPredicted RBP10.01□□□□□ -0.81
CLN3-208ENST00000561505 SLC51BQ86UW2 128 aa10.01□□□□□ -0.81
CLN3-208ENST00000561505 COX7A2LO14548 114 aa10□□□□□ -0.81
CLN3-208ENST00000561505 UBE2D4Q9Y2X8 147 aa10□□□□□ -0.81
CLN3-208ENST00000561505 A0A1B0GUT8 65 aa9.99□□□□□ -0.81
CLN3-208ENST00000561505 VCYO14598 125 aa9.98□□□□□ -0.81
CLN3-208ENST00000561505 TSKUQ8WUA8 353 aa9.98□□□□□ -0.81
CLN3-208ENST00000561505 CAMK2N2Q96S95 79 aa9.98□□□□□ -0.81
CLN3-208ENST00000561505 TIMM21Q9BVV7 248 aa9.98□□□□□ -0.81
CLN3-208ENST00000561505 F8WDY8 70 aa9.97□□□□□ -0.81
CLN3-208ENST00000561505 MT-ND6P03923 174 aa9.97□□□□□ -0.81
CLN3-208ENST00000561505 MALP21145 153 aa9.97□□□□□ -0.81
CLN3-208ENST00000561505 TCTE3Q8IZS6 198 aa9.97□□□□□ -0.81
CLN3-208ENST00000561505 NRACQ8N912 160 aa9.97□□□□□ -0.81
CLN3-208ENST00000561505 HIGD1CA8MV81 97 aa9.96□□□□□ -0.82
CLN3-208ENST00000561505 SMAGPQ0VAQ4 97 aa9.96□□□□□ -0.82
CLN3-208ENST00000561505 PHF5AQ7RTV0 110 aaKnown RBP9.96□□□□□ -0.82
CLN3-208ENST00000561505 FAM104AQ969W3 186 aa9.96□□□□□ -0.82
CLN3-208ENST00000561505 PPP1R17O96001 155 aa9.95□□□□□ -0.82
CLN3-208ENST00000561505 IGLV7-43P04211 117 aa9.95□□□□□ -0.82
CLN3-208ENST00000561505 C1orf137Q5JT78 98 aa9.95□□□□□ -0.82
CLN3-208ENST00000561505 AMN1Q8IY45 258 aa9.95□□□□□ -0.82
CLN3-208ENST00000561505 OR10D4PQ8NGN7 298 aa9.95□□□□□ -0.82
CLN3-208ENST00000561505 OSTCQ9NRP0 149 aa9.95□□□□□ -0.82
CLN3-208ENST00000561505 MRPL35Q9NZE8 188 aaKnown RBP9.95□□□□□ -0.82
CLN3-208ENST00000561505 TLX1NBP0CAT3 122 aa9.94□□□□□ -0.82
CLN3-208ENST00000561505 SUMO2P61956 95 aaKnown RBP9.94□□□□□ -0.82
CLN3-208ENST00000561505 LINC01551Q86U37 167 aa9.94□□□□□ -0.82
CLN3-208ENST00000561505 PRR26Q8N8Z3 221 aa9.94□□□□□ -0.82
CLN3-208ENST00000561505 DIRC1Q969H9 104 aa9.94□□□□□ -0.82
CLN3-208ENST00000561505 BORCS7Q96B45 105 aa9.94□□□□□ -0.82
CLN3-208ENST00000561505 IGHV3OR16-9A0A0B4J2B5 98 aa9.93□□□□□ -0.82
CLN3-208ENST00000561505 RPL32P62910 135 aaKnown RBP9.93□□□□□ -0.82
CLN3-208ENST00000561505 C5orf38Q86SI9 138 aa9.93□□□□□ -0.82
CLN3-208ENST00000561505 KRTAP11-1Q8IUC1 163 aa9.93□□□□□ -0.82
CLN3-208ENST00000561505 H0Y9J4 135 aa9.92□□□□□ -0.82
CLN3-208ENST00000561505 KRTAP1-4P0C5Y4 121 aa9.92□□□□□ -0.82
CLN3-208ENST00000561505 Q6ZUT4 128 aa9.92□□□□□ -0.82
CLN3-208ENST00000561505 OPRPNQ99935 248 aaPredicted RBP9.92□□□□□ -0.82
CLN3-208ENST00000561505 IGLV1-50A0A075B6I6 118 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 TRBV24-1A0A075B6N3 115 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 TRAV13-1A0A0B4J241 112 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 SMKR1H3BMG3 65 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 FCER1GP30273 86 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 BLOC1S1P78537 153 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 RPL18AQ02543 176 aaKnown RBP9.91□□□□□ -0.82
CLN3-208ENST00000561505 SPAG11BQ08648 103 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 RNASE13Q5GAN3 156 aaKnown RBP9.91□□□□□ -0.82
CLN3-208ENST00000561505 KRTAP7-1Q8IUC3 87 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 KIR2DL4Q99706 377 aa9.91□□□□□ -0.82
CLN3-208ENST00000561505 PPP1R2P9O14990 202 aa9.9□□□□□ -0.82
CLN3-208ENST00000561505 IMMP2LQ96T52 175 aa9.9□□□□□ -0.82
CLN3-208ENST00000561505 V9GYV3 84 aa9.9□□□□□ -0.82
CLN3-208ENST00000561505 LINC00862A6NCI5 91 aa9.89□□□□□ -0.83
CLN3-208ENST00000561505 RIGQ13278 110 aa9.89□□□□□ -0.83
CLN3-208ENST00000561505 TMEM241Q24JQ0 296 aa9.89□□□□□ -0.83
CLN3-208ENST00000561505 C20orf78Q9BR46 151 aa9.89□□□□□ -0.83
CLN3-208ENST00000561505 MRPS36P82909 103 aaKnown RBP9.88□□□□□ -0.83
CLN3-208ENST00000561505 C10orf25Q5T742 122 aa9.88□□□□□ -0.83
CLN3-208ENST00000561505 FAM104BQ5XKR9 115 aa9.88□□□□□ -0.83
CLN3-208ENST00000561505 TMEM18Q96B42 140 aa9.88□□□□□ -0.83
CLN3-208ENST00000561505 SMIM7Q9BQ49 75 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 263 ms