RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 RIGQ13278 110 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 TMEM241Q24JQ0 296 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 MAJINQ3KP22 176 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 SERTAD4-AS1Q5TG53 156 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 NUP35Q8NFH5 326 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 MRAP2Q96G30 205 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 PLAC8Q9NZF1 115 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 V9GYV3 84 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 LRP1Q07954 4544 aaKnown RBP6.47□□□□□ -1.37
LDLR-214ENST00000560628 TRBV27A0A0K0K1C4 114 aa6.46□□□□□ -1.38
LDLR-214ENST00000560628 C9JQL5 133 aa6.46□□□□□ -1.38
LDLR-214ENST00000560628 NDUFS6O75380 124 aaKnown RBP6.46□□□□□ -1.38
LDLR-214ENST00000560628 SS18Q15532 418 aa6.46□□□□□ -1.38
LDLR-214ENST00000560628 CDC42SE2Q9NRR3 84 aa6.46□□□□□ -1.38
LDLR-214ENST00000560628 C7orf77A4D0Y5 90 aa6.45□□□□□ -1.38
LDLR-214ENST00000560628 VCYO14598 125 aa6.45□□□□□ -1.38
LDLR-214ENST00000560628 PHOX2AO14813 284 aa6.45□□□□□ -1.38
LDLR-214ENST00000560628 FCER1GP30273 86 aa6.45□□□□□ -1.38
LDLR-214ENST00000560628 RPL23P62829 140 aaKnown RBP6.45□□□□□ -1.38
LDLR-214ENST00000560628 MRPL52Q86TS9 123 aaKnown RBP6.45□□□□□ -1.38
LDLR-214ENST00000560628 ZNF664Q8N3J9 261 aa6.45□□□□□ -1.38
LDLR-214ENST00000560628 STPG4Q8N801 248 aa6.45□□□□□ -1.38
LDLR-214ENST00000560628 ISOC2Q96AB3 205 aa6.45□□□□□ -1.38
LDLR-214ENST00000560628 IGHV1-58A0A0C4DH39 117 aa6.44□□□□□ -1.38
LDLR-214ENST00000560628 SRSF3P84103 164 aaKnown RBP6.44□□□□□ -1.38
LDLR-214ENST00000560628 ADIRFQ15847 76 aa6.44□□□□□ -1.38
LDLR-214ENST00000560628 FAM74A3Q4VXF1 159 aa6.44□□□□□ -1.38
LDLR-214ENST00000560628 RNASE13Q5GAN3 156 aaKnown RBP6.44□□□□□ -1.38
LDLR-214ENST00000560628 Q6ZRU5 148 aa6.44□□□□□ -1.38
LDLR-214ENST00000560628 NRACQ8N912 160 aa6.44□□□□□ -1.38
LDLR-214ENST00000560628 C7orf33Q8WU49 177 aa6.44□□□□□ -1.38
LDLR-214ENST00000560628 NAT8BQ9UHF3 227 aa6.44□□□□□ -1.38
LDLR-214ENST00000560628 A0A096LNI7 61 aa6.43□□□□□ -1.38
LDLR-214ENST00000560628 MT1HL1P0DM35 61 aa6.43□□□□□ -1.38
LDLR-214ENST00000560628 CAMPP49913 170 aa6.43□□□□□ -1.38
LDLR-214ENST00000560628 SUMO2P61956 95 aaKnown RBP6.43□□□□□ -1.38
LDLR-214ENST00000560628 MRPL51Q4U2R6 128 aaKnown RBP6.43□□□□□ -1.38
LDLR-214ENST00000560628 CD164L2Q6UWJ8 174 aa6.43□□□□□ -1.38
LDLR-214ENST00000560628 PKHD1L1Q86WI1 4243 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 ZNF561-AS1K7EIQ3 104 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 PPP1R17O96001 155 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 FAM104BQ5XKR9 115 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 CARD19Q96LW7 228 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 KIR2DL4Q99706 377 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 NAT8Q9UHE5 227 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 PLA2G2DQ9UNK4 145 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 FAT3Q8TDW7 4589 aa6.42□□□□□ -1.38
LDLR-214ENST00000560628 TRAV13-1A0A0B4J241 112 aa6.41□□□□□ -1.38
LDLR-214ENST00000560628 SMIM27A0A1W2PRY6 76 aa6.41□□□□□ -1.38
LDLR-214ENST00000560628 C1orf196B1AJZ1 125 aa6.41□□□□□ -1.38
LDLR-214ENST00000560628 MALP21145 153 aa6.41□□□□□ -1.38
LDLR-214ENST00000560628 SYCNQ0VAF6 134 aa6.41□□□□□ -1.38
LDLR-214ENST00000560628 PEA15Q15121 130 aa6.41□□□□□ -1.38
LDLR-214ENST00000560628 UBE2D4Q9Y2X8 147 aa6.41□□□□□ -1.38
LDLR-214ENST00000560628 IGLV4-69A0A075B6H9 119 aa6.4□□□□□ -1.38
LDLR-214ENST00000560628 COX7A2LO14548 114 aa6.4□□□□□ -1.38
LDLR-214ENST00000560628 CKS2P33552 79 aa6.4□□□□□ -1.38
LDLR-214ENST00000560628 MRPL54Q6P161 138 aaKnown RBP6.4□□□□□ -1.38
LDLR-214ENST00000560628 C5orf38Q86SI9 138 aa6.4□□□□□ -1.38
LDLR-214ENST00000560628 LINC00474Q9P2X8 69 aa6.4□□□□□ -1.38
LDLR-214ENST00000560628 CSDC2Q9Y534 153 aaKnown RBP6.4□□□□□ -1.38
LDLR-214ENST00000560628 LINC00862A6NCI5 91 aa6.39□□□□□ -1.39
LDLR-214ENST00000560628 PPP1R2P9O14990 202 aa6.39□□□□□ -1.39
LDLR-214ENST00000560628 RPL39P62891 51 aaKnown RBP6.39□□□□□ -1.39
LDLR-214ENST00000560628 PRR3P79522 188 aaKnown RBP6.39□□□□□ -1.39
LDLR-214ENST00000560628 SMAGPQ0VAQ4 97 aa6.39□□□□□ -1.39
LDLR-214ENST00000560628 GAGE2BQ13066 116 aa6.39□□□□□ -1.39
LDLR-214ENST00000560628 Q6ZUT4 128 aa6.39□□□□□ -1.39
LDLR-214ENST00000560628 C20orf78Q9BR46 151 aa6.39□□□□□ -1.39
LDLR-214ENST00000560628 TRBV24-1A0A075B6N3 115 aa6.38□□□□□ -1.39
LDLR-214ENST00000560628 TNFRSF6BO95407 300 aa6.38□□□□□ -1.39
LDLR-214ENST00000560628 TMEM18Q96B42 140 aa6.38□□□□□ -1.39
LDLR-214ENST00000560628 OPRPNQ99935 248 aaPredicted RBP6.38□□□□□ -1.39
LDLR-214ENST00000560628 LOC107984640A0A0U1RRK4 108 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 A0A1B0GW15 77 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 D6R8Y8 96 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 TCAPO15273 167 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 NPYP01303 97 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 PTTG1IPP53801 180 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 CAMK2N2Q96S95 79 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 TIMM21Q9BVV7 248 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 PKIGQ9Y2B9 76 aa6.37□□□□□ -1.39
LDLR-214ENST00000560628 A0A0J9YXV3 536 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 A0A1W2PNN7 141 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 F8W036 122 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 S100A8P05109 93 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 RPL32P62910 135 aaKnown RBP6.36□□□□□ -1.39
LDLR-214ENST00000560628 HBBP68871 147 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 FAM104AQ969W3 186 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 SMIM2Q9BVW6 85 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 SMDT1Q9H4I9 107 aa6.36□□□□□ -1.39
LDLR-214ENST00000560628 A0A1B0GXF2 115 aa6.35□□□□□ -1.39
LDLR-214ENST00000560628 APOMO95445 188 aa6.35□□□□□ -1.39
LDLR-214ENST00000560628 SPAG11BQ08648 103 aa6.35□□□□□ -1.39
LDLR-214ENST00000560628 ODF1Q14990 250 aa6.35□□□□□ -1.39
LDLR-214ENST00000560628 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.34□□□□□ -1.39
LDLR-214ENST00000560628 RPL18AQ02543 176 aaKnown RBP6.34□□□□□ -1.39
LDLR-214ENST00000560628 Q6ZRP5 223 aa6.34□□□□□ -1.39
LDLR-214ENST00000560628 TMEM136Q6ZRR5 245 aa6.34□□□□□ -1.39
LDLR-214ENST00000560628 C2orf48Q96LS8 159 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms