RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 F8W036 122 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 PPP1R17O96001 155 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 S100A8P05109 93 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 Q5VSD8 79 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 UQCC3Q6UW78 93 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 MRPL52Q86TS9 123 aaKnown RBP7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 COMMD7Q86VX2 200 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 ANAPC16Q96DE5 110 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 C20orf78Q9BR46 151 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 SMIM2Q9BVW6 85 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 CDC42SE2Q9NRR3 84 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 VPS13BQ7Z7G8 4022 aa7.49□□□□□ -1.21
CCDC88C-208ENST00000554165 FLG2Q5D862 2391 aaPredicted RBP7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 LINC00959A0A1B0GUT2 108 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 TCAPO15273 167 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 ZNF25P17030 456 aaPredicted RBP7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 XCL1P47992 114 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 RPL39P62891 51 aaKnown RBP7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 FOXI1Q12951 378 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 C4orf48Q5BLP8 95 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 SCXQ7RTU7 201 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 ATP5L2Q7Z4Y8 100 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 C15orf56Q8N910 161 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 TMEM101Q96IK0 257 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 BTF3L4Q96K17 158 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 KIR2DL4Q99706 377 aa7.48□□□□□ -1.21
CCDC88C-208ENST00000554165 PANO1I0J062 215 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 CCL25O15444 150 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 HIGD2BQ4VC39 106 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 TMEM136Q6ZRR5 245 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 ZNF664Q8N3J9 261 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 FAM104AQ969W3 186 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 PRELID3AQ96N28 172 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 OPRPNQ99935 248 aaPredicted RBP7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 UBE2D4Q9Y2X8 147 aa7.47□□□□□ -1.21
CCDC88C-208ENST00000554165 RPL32P62910 135 aaKnown RBP7.46□□□□□ -1.22
CCDC88C-208ENST00000554165 DGAT2L7PQ6IED9 249 aa7.46□□□□□ -1.22
CCDC88C-208ENST00000554165 Q6ZUT4 128 aa7.46□□□□□ -1.22
CCDC88C-208ENST00000554165 ORMDL3Q8N138 153 aa7.46□□□□□ -1.22
CCDC88C-208ENST00000554165 C9orf163Q8N9P6 203 aa7.46□□□□□ -1.22
CCDC88C-208ENST00000554165 LOC389332A0A1B0GUA5 103 aa7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 PPBPP02775 128 aa7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 SDIM1Q6ZPB5 146 aa7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 CLRN3Q8NCR9 226 aa7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 CIRBP-AS1Q8TBR5 109 aa7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 LINC00526Q96FQ7 95 aa7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 CHAC1Q9BUX1 264 aa7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.45□□□□□ -1.22
CCDC88C-208ENST00000554165 PHOX2AO14813 284 aa7.44□□□□□ -1.22
CCDC88C-208ENST00000554165 CNBPP62633 177 aaKnown RBP7.44□□□□□ -1.22
CCDC88C-208ENST00000554165 SEC11CQ9BY50 192 aa7.44□□□□□ -1.22
CCDC88C-208ENST00000554165 TRAV13-1A0A0B4J241 112 aa7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 CHTF8P0CG12 524 aa7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 SS18Q15532 418 aa7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 KIAA1644Q3SXP7 199 aa7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 LCE2AQ5TA79 106 aaPredicted RBP7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 LINC00528Q8N1L1 170 aa7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 TIMM21Q9BVV7 248 aa7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 CSDC2Q9Y534 153 aaKnown RBP7.43□□□□□ -1.22
CCDC88C-208ENST00000554165 GVQW2A0A096LPI5 108 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-208ENST00000554165 FAM229AH3BQW9 127 aa7.42□□□□□ -1.22
CCDC88C-208ENST00000554165 INAFM2P0DMQ5 153 aa7.42□□□□□ -1.22
CCDC88C-208ENST00000554165 C10orf91Q5T1B1 145 aa7.42□□□□□ -1.22
CCDC88C-208ENST00000554165 IMMP2LQ96T52 175 aa7.42□□□□□ -1.22
CCDC88C-208ENST00000554165 CTDSP1Q9GZU7 261 aa7.42□□□□□ -1.22
CCDC88C-208ENST00000554165 AP5S1Q9NUS5 200 aa7.42□□□□□ -1.22
CCDC88C-208ENST00000554165 CFAP161Q6P656 301 aa7.41□□□□□ -1.22
CCDC88C-208ENST00000554165 CD164L2Q6UWJ8 174 aa7.41□□□□□ -1.22
CCDC88C-208ENST00000554165 MAP1LC3AQ9H492 121 aa7.41□□□□□ -1.22
CCDC88C-208ENST00000554165 IGHV3-64A0A075B6Q5 118 aa7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 PRSS47A8MTI9 375 aa7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 C1orf196B1AJZ1 125 aa7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 RAB5AP20339 215 aa7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 C5orf38Q86SI9 138 aa7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 PRSS3P2Q8NHM4 247 aa7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 TMEM18Q96B42 140 aa7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 CARHSP1Q9Y2V2 147 aaKnown RBP7.4□□□□□ -1.22
CCDC88C-208ENST00000554165 IGHV1-58A0A0C4DH39 117 aa7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 IFI27P40305 119 aaPredicted RBP7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 KRTAP10-4P60372 401 aaPredicted RBP7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 COX6A2Q02221 97 aa7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 ZC2HC1BQ5TFG8 222 aa7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 Q8N8P6 123 aa7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 RPS10P5Q9NQ39 176 aa7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 SPANXA1Q9NS26 97 aa7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 LAMTOR2Q9Y2Q5 125 aa7.39□□□□□ -1.23
CCDC88C-208ENST00000554165 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.38□□□□□ -1.23
CCDC88C-208ENST00000554165 MRPS36P82909 103 aaKnown RBP7.38□□□□□ -1.23
CCDC88C-208ENST00000554165 SMAGPQ0VAQ4 97 aa7.38□□□□□ -1.23
CCDC88C-208ENST00000554165 IGLV4-3A0A075B6K6 122 aa7.37□□□□□ -1.23
CCDC88C-208ENST00000554165 IFITM10A6NMD0 228 aa7.37□□□□□ -1.23
CCDC88C-208ENST00000554165 COX7A2LO14548 114 aa7.37□□□□□ -1.23
CCDC88C-208ENST00000554165 CIRBPQ14011 172 aaKnown RBP7.37□□□□□ -1.23
CCDC88C-208ENST00000554165 MYCBP2O75592 4640 aa7.37□□□□□ -1.23
CCDC88C-208ENST00000554165 DMBT1Q9UGM3 2413 aaPredicted RBP7.36□□□□□ -1.23
CCDC88C-208ENST00000554165 IGLV4-69A0A075B6H9 119 aa7.36□□□□□ -1.23
CCDC88C-208ENST00000554165 TRAV9-1A0A075B6T8 112 aa7.36□□□□□ -1.23
CCDC88C-208ENST00000554165 TGIF2-C20orf24A0A0A6YYL0 155 aa7.36□□□□□ -1.23
CCDC88C-208ENST00000554165 MALP21145 153 aa7.36□□□□□ -1.23
CCDC88C-208ENST00000554165 S100PP25815 95 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms