RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 PLAC8Q9NZF1 115 aa8.1□□□□□ -1.11
LINC00643-202ENST00000553426 PLA2G2DQ9UNK4 145 aa8.1□□□□□ -1.11
LINC00643-202ENST00000553426 IGKV2-24A0A0C4DH68 120 aa8.09□□□□□ -1.11
LINC00643-202ENST00000553426 RIGQ13278 110 aa8.09□□□□□ -1.11
LINC00643-202ENST00000553426 PRSS3P2Q8NHM4 247 aa8.09□□□□□ -1.11
LINC00643-202ENST00000553426 LINC00474Q9P2X8 69 aa8.09□□□□□ -1.11
LINC00643-202ENST00000553426 IGHV1-58A0A0C4DH39 117 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 LINC00959A0A1B0GUT2 108 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 C7orf77A4D0Y5 90 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 ZNF561-AS1K7EIQ3 104 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 CCL25O15444 150 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 TSHBP01222 138 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 ESDP10768 282 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 RAB4AP20338 218 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 FCER1GP30273 86 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 FOXI1Q12951 378 aa8.08□□□□□ -1.12
LINC00643-202ENST00000553426 TRBV27A0A0K0K1C4 114 aa8.07□□□□□ -1.12
LINC00643-202ENST00000553426 VCYO14598 125 aa8.07□□□□□ -1.12
LINC00643-202ENST00000553426 POLR2KP53803 58 aaKnown RBP8.07□□□□□ -1.12
LINC00643-202ENST00000553426 MRPL52Q86TS9 123 aaKnown RBP8.07□□□□□ -1.12
LINC00643-202ENST00000553426 AMN1Q8IY45 258 aa8.07□□□□□ -1.12
LINC00643-202ENST00000553426 ZNF664Q8N3J9 261 aa8.07□□□□□ -1.12
LINC00643-202ENST00000553426 STPG4Q8N801 248 aa8.07□□□□□ -1.12
LINC00643-202ENST00000553426 PHOX2AO14813 284 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 GAS8-AS1O95177 125 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 SRP19P09132 144 aaKnown RBP8.06□□□□□ -1.12
LINC00643-202ENST00000553426 TMEM241Q24JQ0 296 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 FAM74A3Q4VXF1 159 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 CD164L2Q6UWJ8 174 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 CARD19Q96LW7 228 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 KIR2DL4Q99706 377 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 CDC42SE2Q9NRR3 84 aa8.06□□□□□ -1.12
LINC00643-202ENST00000553426 C1orf196B1AJZ1 125 aa8.05□□□□□ -1.12
LINC00643-202ENST00000553426 MALP21145 153 aa8.05□□□□□ -1.12
LINC00643-202ENST00000553426 SUMO2P61956 95 aaKnown RBP8.05□□□□□ -1.12
LINC00643-202ENST00000553426 NUP35Q8NFH5 326 aa8.05□□□□□ -1.12
LINC00643-202ENST00000553426 ISOC2Q96AB3 205 aa8.05□□□□□ -1.12
LINC00643-202ENST00000553426 NAT8BQ9UHF3 227 aa8.05□□□□□ -1.12
LINC00643-202ENST00000553426 PPP1R2P9O14990 202 aa8.04□□□□□ -1.12
LINC00643-202ENST00000553426 TMEM18Q96B42 140 aa8.04□□□□□ -1.12
LINC00643-202ENST00000553426 V9GYV3 84 aa8.04□□□□□ -1.12
LINC00643-202ENST00000553426 A0A096LNI7 61 aa8.03□□□□□ -1.12
LINC00643-202ENST00000553426 SMKR1H3BMG3 65 aa8.03□□□□□ -1.12
LINC00643-202ENST00000553426 COX7A2LO14548 114 aa8.03□□□□□ -1.12
LINC00643-202ENST00000553426 SYCNQ0VAF6 134 aa8.03□□□□□ -1.12
LINC00643-202ENST00000553426 ADIRFQ15847 76 aa8.03□□□□□ -1.12
LINC00643-202ENST00000553426 LINC00526Q96FQ7 95 aa8.03□□□□□ -1.12
LINC00643-202ENST00000553426 CSDC2Q9Y534 153 aaKnown RBP8.03□□□□□ -1.12
LINC00643-202ENST00000553426 TCAPO15273 167 aa8.02□□□□□ -1.13
LINC00643-202ENST00000553426 NAT8Q9UHE5 227 aa8.02□□□□□ -1.13
LINC00643-202ENST00000553426 A0A1B0GW15 77 aa8.01□□□□□ -1.13
LINC00643-202ENST00000553426 LINC00862A6NCI5 91 aa8.01□□□□□ -1.13
LINC00643-202ENST00000553426 CAMPP49913 170 aa8.01□□□□□ -1.13
LINC00643-202ENST00000553426 RPL23P62829 140 aaKnown RBP8.01□□□□□ -1.13
LINC00643-202ENST00000553426 PRR3P79522 188 aaKnown RBP8.01□□□□□ -1.13
LINC00643-202ENST00000553426 FAM104BQ5XKR9 115 aa8.01□□□□□ -1.13
LINC00643-202ENST00000553426 NRACQ8N912 160 aa8.01□□□□□ -1.13
LINC00643-202ENST00000553426 LRP2P98164 4655 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 TRAV13-1A0A0B4J241 112 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 APOMO95445 188 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 S100A8P05109 93 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 MT1HL1P0DM35 61 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 CKS2P33552 79 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 PEA15Q15121 130 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 MRPL51Q4U2R6 128 aaKnown RBP8□□□□□ -1.13
LINC00643-202ENST00000553426 C20orf78Q9BR46 151 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 UBE2D4Q9Y2X8 147 aa8□□□□□ -1.13
LINC00643-202ENST00000553426 IGLV4-69A0A075B6H9 119 aa7.99□□□□□ -1.13
LINC00643-202ENST00000553426 LOC107984640A0A0U1RRK4 108 aa7.99□□□□□ -1.13
LINC00643-202ENST00000553426 SMIM27A0A1W2PRY6 76 aa7.99□□□□□ -1.13
LINC00643-202ENST00000553426 CAMK2N2Q96S95 79 aa7.99□□□□□ -1.13
LINC00643-202ENST00000553426 TIMM21Q9BVV7 248 aa7.99□□□□□ -1.13
LINC00643-202ENST00000553426 SMDT1Q9H4I9 107 aa7.99□□□□□ -1.13
LINC00643-202ENST00000553426 TNXBP22105 4242 aa7.98□□□□□ -1.13
LINC00643-202ENST00000553426 F8W036 122 aa7.98□□□□□ -1.13
LINC00643-202ENST00000553426 PTTG1IPP53801 180 aa7.98□□□□□ -1.13
LINC00643-202ENST00000553426 GAGE2BQ13066 116 aa7.98□□□□□ -1.13
LINC00643-202ENST00000553426 RNASE13Q5GAN3 156 aaKnown RBP7.98□□□□□ -1.13
LINC00643-202ENST00000553426 Q6ZRP5 223 aa7.98□□□□□ -1.13
LINC00643-202ENST00000553426 TRBV24-1A0A075B6N3 115 aa7.97□□□□□ -1.13
LINC00643-202ENST00000553426 RPL32P62910 135 aaKnown RBP7.97□□□□□ -1.13
LINC00643-202ENST00000553426 REG3GQ6UW15 175 aa7.97□□□□□ -1.13
LINC00643-202ENST00000553426 SPINK6Q6UWN8 80 aa7.97□□□□□ -1.13
LINC00643-202ENST00000553426 C5orf38Q86SI9 138 aa7.97□□□□□ -1.13
LINC00643-202ENST00000553426 C2orf48Q96LS8 159 aa7.97□□□□□ -1.13
LINC00643-202ENST00000553426 TNFRSF6BO95407 300 aa7.96□□□□□ -1.14
LINC00643-202ENST00000553426 HBBP68871 147 aa7.96□□□□□ -1.14
LINC00643-202ENST00000553426 Q6ZUT4 128 aa7.96□□□□□ -1.14
LINC00643-202ENST00000553426 LINC01600Q96MT4 127 aa7.96□□□□□ -1.14
LINC00643-202ENST00000553426 D6R8Y8 96 aa7.95□□□□□ -1.14
LINC00643-202ENST00000553426 PPBPP02775 128 aa7.95□□□□□ -1.14
LINC00643-202ENST00000553426 RPL18AQ02543 176 aaKnown RBP7.95□□□□□ -1.14
LINC00643-202ENST00000553426 MRPL54Q6P161 138 aaKnown RBP7.95□□□□□ -1.14
LINC00643-202ENST00000553426 OR10D4PQ8NGN7 298 aa7.95□□□□□ -1.14
LINC00643-202ENST00000553426 SMIM2Q9BVW6 85 aa7.95□□□□□ -1.14
LINC00643-202ENST00000553426 SPANXA1Q9NS26 97 aa7.95□□□□□ -1.14
LINC00643-202ENST00000553426 C9JQL5 133 aa7.94□□□□□ -1.14
LINC00643-202ENST00000553426 SPAG11BQ08648 103 aa7.94□□□□□ -1.14
LINC00643-202ENST00000553426 F8WDY8 70 aa7.93□□□□□ -1.14
LINC00643-202ENST00000553426 RAB5AP20339 215 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms