RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 Q6ZRP5 223 aa8□□□□□ -1.13
PTCH1-221ENST00000550914 CARD19Q96LW7 228 aa8□□□□□ -1.13
PTCH1-221ENST00000550914 A8MWL6 223 aa7.99□□□□□ -1.13
PTCH1-221ENST00000550914 FOXA3P55318 350 aaPredicted RBP7.99□□□□□ -1.13
PTCH1-221ENST00000550914 SRSF9Q13242 221 aaKnown RBP eCLIP7.99□□□□□ -1.13
PTCH1-221ENST00000550914 CD164L2Q6UWJ8 174 aa7.99□□□□□ -1.13
PTCH1-221ENST00000550914 FAM231DQ6ZW35 169 aa7.99□□□□□ -1.13
PTCH1-221ENST00000550914 MRPL52Q86TS9 123 aaKnown RBP7.99□□□□□ -1.13
PTCH1-221ENST00000550914 MRAP2Q96G30 205 aa7.99□□□□□ -1.13
PTCH1-221ENST00000550914 TMEM250H0YL14 139 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 ZNF561-AS1K7EIQ3 104 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 TSHBP01222 138 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 SYCNQ0VAF6 134 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 SS18Q15532 418 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 CT83Q5H943 113 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 SLC51BQ86UW2 128 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 CDC42SE2Q9NRR3 84 aa7.98□□□□□ -1.13
PTCH1-221ENST00000550914 GATCO43716 136 aaKnown RBP7.97□□□□□ -1.13
PTCH1-221ENST00000550914 ISOC2Q96AB3 205 aa7.97□□□□□ -1.13
PTCH1-221ENST00000550914 ST20Q9HBF5 79 aa7.97□□□□□ -1.13
PTCH1-221ENST00000550914 TRBV27A0A0K0K1C4 114 aa7.96□□□□□ -1.14
PTCH1-221ENST00000550914 PTTG1IPP53801 180 aa7.96□□□□□ -1.14
PTCH1-221ENST00000550914 POLR2KP53803 58 aaKnown RBP7.96□□□□□ -1.14
PTCH1-221ENST00000550914 LCE2AQ5TA79 106 aaPredicted RBP7.96□□□□□ -1.14
PTCH1-221ENST00000550914 ZNF664Q8N3J9 261 aa7.96□□□□□ -1.14
PTCH1-221ENST00000550914 BORCS7Q96B45 105 aa7.96□□□□□ -1.14
PTCH1-221ENST00000550914 LINC00526Q96FQ7 95 aa7.96□□□□□ -1.14
PTCH1-221ENST00000550914 LOC107984640A0A0U1RRK4 108 aa7.95□□□□□ -1.14
PTCH1-221ENST00000550914 C7orf77A4D0Y5 90 aa7.95□□□□□ -1.14
PTCH1-221ENST00000550914 CAMPP49913 170 aa7.95□□□□□ -1.14
PTCH1-221ENST00000550914 TCTE3Q8IZS6 198 aa7.95□□□□□ -1.14
PTCH1-221ENST00000550914 TMEM191AQ9H0A3 160 aa7.95□□□□□ -1.14
PTCH1-221ENST00000550914 TMEM242Q9NWH2 141 aa7.95□□□□□ -1.14
PTCH1-221ENST00000550914 C1orf196B1AJZ1 125 aa7.94□□□□□ -1.14
PTCH1-221ENST00000550914 SMAGPQ0VAQ4 97 aa7.94□□□□□ -1.14
PTCH1-221ENST00000550914 ODF1Q14990 250 aa7.94□□□□□ -1.14
PTCH1-221ENST00000550914 CSDC2Q9Y534 153 aaKnown RBP7.94□□□□□ -1.14
PTCH1-221ENST00000550914 IGLV4-69A0A075B6H9 119 aa7.93□□□□□ -1.14
PTCH1-221ENST00000550914 A0A1B0GUT8 65 aa7.93□□□□□ -1.14
PTCH1-221ENST00000550914 COX7A2LO14548 114 aa7.93□□□□□ -1.14
PTCH1-221ENST00000550914 GAS8-AS1O95177 125 aa7.93□□□□□ -1.14
PTCH1-221ENST00000550914 MALP21145 153 aa7.93□□□□□ -1.14
PTCH1-221ENST00000550914 PPP1R17O96001 155 aa7.92□□□□□ -1.14
PTCH1-221ENST00000550914 RAB4AP20338 218 aa7.92□□□□□ -1.14
PTCH1-221ENST00000550914 NUP35Q8NFH5 326 aa7.92□□□□□ -1.14
PTCH1-221ENST00000550914 TSKUQ8WUA8 353 aa7.92□□□□□ -1.14
PTCH1-221ENST00000550914 C2orf48Q96LS8 159 aa7.92□□□□□ -1.14
PTCH1-221ENST00000550914 HIGD1CA8MV81 97 aa7.91□□□□□ -1.14
PTCH1-221ENST00000550914 VCYO14598 125 aa7.91□□□□□ -1.14
PTCH1-221ENST00000550914 APOMO95445 188 aa7.91□□□□□ -1.14
PTCH1-221ENST00000550914 BLOC1S1P78537 153 aa7.91□□□□□ -1.14
PTCH1-221ENST00000550914 GAGE2BQ13066 116 aa7.91□□□□□ -1.14
PTCH1-221ENST00000550914 A0A1W2PNN7 141 aa7.9□□□□□ -1.14
PTCH1-221ENST00000550914 FCER1GP30273 86 aa7.9□□□□□ -1.14
PTCH1-221ENST00000550914 RNF151Q2KHN1 245 aa7.9□□□□□ -1.14
PTCH1-221ENST00000550914 LCE2CQ5TA81 110 aa7.9□□□□□ -1.14
PTCH1-221ENST00000550914 CAMK2N2Q96S95 79 aa7.9□□□□□ -1.14
PTCH1-221ENST00000550914 LINC01551Q86U37 167 aa7.89□□□□□ -1.15
PTCH1-221ENST00000550914 AMN1Q8IY45 258 aa7.89□□□□□ -1.15
PTCH1-221ENST00000550914 KIR2DL4Q99706 377 aa7.89□□□□□ -1.15
PTCH1-221ENST00000550914 TIMM21Q9BVV7 248 aa7.89□□□□□ -1.15
PTCH1-221ENST00000550914 OSTCQ9NRP0 149 aa7.89□□□□□ -1.15
PTCH1-221ENST00000550914 PSORS1C2Q9UIG4 136 aa7.89□□□□□ -1.15
PTCH1-221ENST00000550914 UBE2D4Q9Y2X8 147 aa7.89□□□□□ -1.15
PTCH1-221ENST00000550914 F8WDY8 70 aa7.88□□□□□ -1.15
PTCH1-221ENST00000550914 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.88□□□□□ -1.15
PTCH1-221ENST00000550914 PPP1R2P9O14990 202 aa7.88□□□□□ -1.15
PTCH1-221ENST00000550914 MT-ND6P03923 174 aa7.88□□□□□ -1.15
PTCH1-221ENST00000550914 SUMO2P61956 95 aaKnown RBP7.88□□□□□ -1.15
PTCH1-221ENST00000550914 C9orf116Q5BN46 136 aaPredicted RBP7.88□□□□□ -1.15
PTCH1-221ENST00000550914 NRACQ8N912 160 aa7.88□□□□□ -1.15
PTCH1-221ENST00000550914 SMIM7Q9BQ49 75 aa7.88□□□□□ -1.15
PTCH1-221ENST00000550914 TRAV13-1A0A0B4J241 112 aa7.87□□□□□ -1.15
PTCH1-221ENST00000550914 CEBPGP53567 150 aa7.87□□□□□ -1.15
PTCH1-221ENST00000550914 RIGQ13278 110 aa7.87□□□□□ -1.15
PTCH1-221ENST00000550914 OR10D4PQ8NGN7 298 aa7.87□□□□□ -1.15
PTCH1-221ENST00000550914 TMEM18Q96B42 140 aa7.87□□□□□ -1.15
PTCH1-221ENST00000550914 TCAPO15273 167 aa7.86□□□□□ -1.15
PTCH1-221ENST00000550914 RPL18AQ02543 176 aaKnown RBP7.86□□□□□ -1.15
PTCH1-221ENST00000550914 A6NJY4 79 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 SMKR1H3BMG3 65 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 RPL32P62910 135 aaKnown RBP7.85□□□□□ -1.15
PTCH1-221ENST00000550914 SPAG11BQ08648 103 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 RNASE13Q5GAN3 156 aaKnown RBP7.85□□□□□ -1.15
PTCH1-221ENST00000550914 C1orf137Q5JT78 98 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 ALKAL2Q6UX46 152 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 Q6ZUT4 128 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 C5orf38Q86SI9 138 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 MRPL35Q9NZE8 188 aaKnown RBP7.85□□□□□ -1.15
PTCH1-221ENST00000550914 V9GYV3 84 aa7.85□□□□□ -1.15
PTCH1-221ENST00000550914 LINC00862A6NCI5 91 aa7.84□□□□□ -1.15
PTCH1-221ENST00000550914 ZNF727A8MUV8 499 aa7.84□□□□□ -1.15
PTCH1-221ENST00000550914 DIRC1Q969H9 104 aa7.84□□□□□ -1.15
PTCH1-221ENST00000550914 IMMP2LQ96T52 175 aa7.84□□□□□ -1.15
PTCH1-221ENST00000550914 C20orf78Q9BR46 151 aa7.84□□□□□ -1.15
PTCH1-221ENST00000550914 EIF5A2Q9GZV4 153 aaKnown RBP7.84□□□□□ -1.15
PTCH1-221ENST00000550914 TRBV24-1A0A075B6N3 115 aa7.83□□□□□ -1.16
PTCH1-221ENST00000550914 FAM104BQ5XKR9 115 aa7.83□□□□□ -1.16
PTCH1-221ENST00000550914 PHF5AQ7RTV0 110 aaKnown RBP7.83□□□□□ -1.16
PTCH1-221ENST00000550914 OPRPNQ99935 248 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms