RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SND1-IT1Q9HBX3 110 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 NOP10Q9NPE3 64 aaKnown RBP10.65□□□□□ -0.7
LIMS1-215ENST00000544547 CCL24O00175 119 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 MRGPRG-AS1Q2M3A8 158 aa10.65□□□□□ -0.7
LIMS1-215ENST00000544547 RBM3P98179 157 aaKnown RBP10.64□□□□□ -0.71
LIMS1-215ENST00000544547 Q6Q795 121 aa10.64□□□□□ -0.71
LIMS1-215ENST00000544547 BOD1L1Q8NFC6 3051 aa10.64□□□□□ -0.71
LIMS1-215ENST00000544547 IGIPA6NJ69 53 aa10.64□□□□□ -0.71
LIMS1-215ENST00000544547 COX7A2LO14548 114 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 MED14OSP0DP75 135 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 SLURP1P55000 103 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 ADORA2A-AS1P86434 159 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 APRG1Q8IVJ8 170 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 VSIG2Q96IQ7 327 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 LST1O00453 97 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 POLR2KP53803 58 aaKnown RBP10.63□□□□□ -0.71
LIMS1-215ENST00000544547 TRAV23DV6A0A075B6W5 121 aa10.63□□□□□ -0.71
LIMS1-215ENST00000544547 LY6LH3BQJ8 138 aa10.62□□□□□ -0.71
LIMS1-215ENST00000544547 MTORP42345 2549 aa10.62□□□□□ -0.71
LIMS1-215ENST00000544547 PROK1P58294 105 aa10.62□□□□□ -0.71
LIMS1-215ENST00000544547 MRAPQ8TCY5 172 aa10.62□□□□□ -0.71
LIMS1-215ENST00000544547 CLPSL1A2RUU4 121 aa10.62□□□□□ -0.71
LIMS1-215ENST00000544547 PIK3CD-AS1Q5SR53 167 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 C5orf38Q86SI9 138 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 TMEM61Q8N0U2 210 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 NKAPP1Q8N9T2 125 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 F8W735 103 aaPredicted RBP10.61□□□□□ -0.71
LIMS1-215ENST00000544547 CDK2AP2O75956 126 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 M0QY20 66 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 DEFB113Q30KQ7 82 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 C20orf197Q8N268 126 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 ODF3Q96PU9 254 aa10.61□□□□□ -0.71
LIMS1-215ENST00000544547 IGHV4-4A0A075B6R2 117 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 TRBV27A0A0K0K1C4 114 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 CRYGDP07320 174 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 C10orf105Q8TEF2 133 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 RNF152Q8N8N0 203 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 XCL1P47992 114 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 C5orf56Q8N8D9 126 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 MIR7-3HGQ8N6C7 128 aa10.6□□□□□ -0.71
LIMS1-215ENST00000544547 TNFRSF13BO14836 293 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-215ENST00000544547 POM121L12Q8N7R1 296 aa10.59□□□□□ -0.71
LIMS1-215ENST00000544547 LINC00308Q8TCZ7 52 aa10.59□□□□□ -0.71
LIMS1-215ENST00000544547 SLPIP03973 132 aa10.59□□□□□ -0.71
LIMS1-215ENST00000544547 GPHB5Q86YW7 130 aa10.59□□□□□ -0.71
LIMS1-215ENST00000544547 DSCR8Q96T75 97 aa10.59□□□□□ -0.71
LIMS1-215ENST00000544547 ORMDL1Q9P0S3 153 aa10.59□□□□□ -0.71
LIMS1-215ENST00000544547 RAI1Q7Z5J4 1906 aaPredicted RBP10.58□□□□□ -0.72
LIMS1-215ENST00000544547 COX7CP15954 63 aa10.58□□□□□ -0.72
LIMS1-215ENST00000544547 ADAMTSL4-AS1Q5T5F5 129 aa10.58□□□□□ -0.72
LIMS1-215ENST00000544547 FAM19A5Q7Z5A7 132 aaPredicted RBP10.58□□□□□ -0.72
LIMS1-215ENST00000544547 POLQO75417 2590 aa10.58□□□□□ -0.72
LIMS1-215ENST00000544547 TIRAPP58753 221 aa10.58□□□□□ -0.72
LIMS1-215ENST00000544547 SMIM9A6NGZ8 99 aa10.58□□□□□ -0.72
LIMS1-215ENST00000544547 TRAV25A0A0B4J276 109 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 IGHV4OR15-8A0A075B7B6 117 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 A0A087WW49 117 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 ODF3BA8MYP8 253 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 TSHBP01222 138 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 COX8CQ7Z4L0 72 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 PSMG3-AS1Q96PY0 264 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 LINC00467Q9BRT7 94 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 SPANXCQ9NY87 97 aa10.57□□□□□ -0.72
LIMS1-215ENST00000544547 PRM2P04554 102 aa10.56□□□□□ -0.72
LIMS1-215ENST00000544547 CDSNQ15517 529 aa10.56□□□□□ -0.72
LIMS1-215ENST00000544547 HRCT1Q6UXD1 115 aa10.56□□□□□ -0.72
LIMS1-215ENST00000544547 IMUPQ9GZP8 106 aa10.56□□□□□ -0.72
LIMS1-215ENST00000544547 MAP1AP78559 2803 aaPredicted RBP10.55□□□□□ -0.72
LIMS1-215ENST00000544547 A0A087WVE0 104 aa10.55□□□□□ -0.72
LIMS1-215ENST00000544547 NCR3O14931 201 aa10.55□□□□□ -0.72
LIMS1-215ENST00000544547 SIRPDQ9H106 197 aa10.55□□□□□ -0.72
LIMS1-215ENST00000544547 PKIGQ9Y2B9 76 aa10.55□□□□□ -0.72
LIMS1-215ENST00000544547 HIST2H2BCQ6DN03 193 aa10.54□□□□□ -0.72
LIMS1-215ENST00000544547 HIST2H2BDQ6DRA6 164 aa10.54□□□□□ -0.72
LIMS1-215ENST00000544547 IGKV2D-24A0A075B6R9 120 aa10.54□□□□□ -0.72
LIMS1-215ENST00000544547 H0YGX0 51 aa10.54□□□□□ -0.72
LIMS1-215ENST00000544547 NHLRC4P0CG21 123 aaPredicted RBP10.54□□□□□ -0.72
LIMS1-215ENST00000544547 PSMB8P28062 276 aa10.54□□□□□ -0.72
LIMS1-215ENST00000544547 ESM1Q9NQ30 184 aa10.54□□□□□ -0.72
LIMS1-215ENST00000544547 A0A0J9YX75 114 aa10.53□□□□□ -0.72
LIMS1-215ENST00000544547 FBXL19-AS1Q494R0 122 aa10.53□□□□□ -0.72
LIMS1-215ENST00000544547 USP17L23D6RBM5 183 aa10.53□□□□□ -0.72
LIMS1-215ENST00000544547 CSDC2Q9Y534 153 aaKnown RBP10.53□□□□□ -0.72
LIMS1-215ENST00000544547 IGLV10-54A0A075B6I4 117 aa10.52□□□□□ -0.73
LIMS1-215ENST00000544547 IGHG2P01859 326 aa10.52□□□□□ -0.73
LIMS1-215ENST00000544547 FAM240AA0A1B0GVK7 77 aa10.52□□□□□ -0.73
LIMS1-215ENST00000544547 GYPEP15421 78 aa10.52□□□□□ -0.73
LIMS1-215ENST00000544547 WFDC9Q8NEX5 89 aa10.52□□□□□ -0.73
LIMS1-215ENST00000544547 WDFY3Q8IZQ1 3526 aa10.51□□□□□ -0.73
LIMS1-215ENST00000544547 RPL18AQ02543 176 aaKnown RBP10.51□□□□□ -0.73
LIMS1-215ENST00000544547 RMI2Q96E14 147 aa10.51□□□□□ -0.73
LIMS1-215ENST00000544547 TRBV6-5A0A0K0K1A5 114 aa10.51□□□□□ -0.73
LIMS1-215ENST00000544547 COX7B2Q8TF08 81 aa10.51□□□□□ -0.73
LIMS1-215ENST00000544547 LINC00526Q96FQ7 95 aa10.51□□□□□ -0.73
LIMS1-215ENST00000544547 SERP2Q8N6R1 65 aa10.5□□□□□ -0.73
LIMS1-215ENST00000544547 F8P00451 2351 aa10.5□□□□□ -0.73
LIMS1-215ENST00000544547 LINC01546A6NGU7 62 aa10.5□□□□□ -0.73
LIMS1-215ENST00000544547 K7EMT4 169 aa10.5□□□□□ -0.73
LIMS1-215ENST00000544547 LRRC75A-AS1Q8N1F1 130 aa10.5□□□□□ -0.73
LIMS1-215ENST00000544547 BRK1Q8WUW1 75 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms