RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SYCNQ0VAF6 134 aa8.38□□□□□ -1.07
SS18-204ENST00000539244 CD164L2Q6UWJ8 174 aa8.38□□□□□ -1.07
SS18-204ENST00000539244 OCC1Q8TAD7 63 aa8.38□□□□□ -1.07
SS18-204ENST00000539244 TMEM101Q96IK0 257 aa8.38□□□□□ -1.07
SS18-204ENST00000539244 ZNF561-AS1K7EIQ3 104 aa8.37□□□□□ -1.07
SS18-204ENST00000539244 TAGLN2P37802 199 aaKnown RBP8.37□□□□□ -1.07
SS18-204ENST00000539244 MRPL52Q86TS9 123 aaKnown RBP8.37□□□□□ -1.07
SS18-204ENST00000539244 CDC42SE2Q9NRR3 84 aa8.37□□□□□ -1.07
SS18-204ENST00000539244 TSHBP01222 138 aa8.36□□□□□ -1.07
SS18-204ENST00000539244 PMCHP20382 165 aa8.36□□□□□ -1.07
SS18-204ENST00000539244 SS18Q15532 418 aa8.36□□□□□ -1.07
SS18-204ENST00000539244 MRAP2Q96G30 205 aa8.36□□□□□ -1.07
SS18-204ENST00000539244 LOC107984640A0A0U1RRK4 108 aa8.35□□□□□ -1.07
SS18-204ENST00000539244 CAMPP49913 170 aa8.35□□□□□ -1.07
SS18-204ENST00000539244 POLR2KP53803 58 aaKnown RBP8.34□□□□□ -1.07
SS18-204ENST00000539244 FAM231DQ6ZW35 169 aa8.34□□□□□ -1.07
SS18-204ENST00000539244 ZNF664Q8N3J9 261 aa8.34□□□□□ -1.07
SS18-204ENST00000539244 ISOC2Q96AB3 205 aa8.34□□□□□ -1.07
SS18-204ENST00000539244 ST20Q9HBF5 79 aa8.34□□□□□ -1.07
SS18-204ENST00000539244 TMEM242Q9NWH2 141 aa8.34□□□□□ -1.07
SS18-204ENST00000539244 LPAP08519 4548 aa8.33□□□□□ -1.08
SS18-204ENST00000539244 TRBV27A0A0K0K1C4 114 aa8.33□□□□□ -1.08
SS18-204ENST00000539244 A8MWL6 223 aa8.33□□□□□ -1.08
SS18-204ENST00000539244 GAS8-AS1O95177 125 aa8.33□□□□□ -1.08
SS18-204ENST00000539244 CT83Q5H943 113 aa8.33□□□□□ -1.08
SS18-204ENST00000539244 IGLV4-69A0A075B6H9 119 aa8.32□□□□□ -1.08
SS18-204ENST00000539244 A0A1W2PNN7 141 aa8.32□□□□□ -1.08
SS18-204ENST00000539244 C7orf77A4D0Y5 90 aa8.32□□□□□ -1.08
SS18-204ENST00000539244 GATCO43716 136 aaKnown RBP8.32□□□□□ -1.08
SS18-204ENST00000539244 GAGE2BQ13066 116 aa8.32□□□□□ -1.08
SS18-204ENST00000539244 NUP35Q8NFH5 326 aa8.32□□□□□ -1.08
SS18-204ENST00000539244 CSDC2Q9Y534 153 aaKnown RBP8.32□□□□□ -1.08
SS18-204ENST00000539244 C1orf196B1AJZ1 125 aa8.31□□□□□ -1.08
SS18-204ENST00000539244 TMEM250H0YL14 139 aa8.31□□□□□ -1.08
SS18-204ENST00000539244 APOMO95445 188 aa8.31□□□□□ -1.08
SS18-204ENST00000539244 TMEM191AQ9H0A3 160 aa8.31□□□□□ -1.08
SS18-204ENST00000539244 PSORS1C2Q9UIG4 136 aa8.31□□□□□ -1.08
SS18-204ENST00000539244 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.3□□□□□ -1.08
SS18-204ENST00000539244 COX7A2LO14548 114 aa8.3□□□□□ -1.08
SS18-204ENST00000539244 MALP21145 153 aa8.3□□□□□ -1.08
SS18-204ENST00000539244 SLC51BQ86UW2 128 aa8.3□□□□□ -1.08
SS18-204ENST00000539244 C2orf48Q96LS8 159 aa8.3□□□□□ -1.08
SS18-204ENST00000539244 C9orf116Q5BN46 136 aaPredicted RBP8.29□□□□□ -1.08
SS18-204ENST00000539244 BORCS7Q96B45 105 aa8.29□□□□□ -1.08
SS18-204ENST00000539244 CAMK2N2Q96S95 79 aa8.29□□□□□ -1.08
SS18-204ENST00000539244 A0A1B0GUT8 65 aa8.28□□□□□ -1.08
SS18-204ENST00000539244 MT-ND6P03923 174 aa8.28□□□□□ -1.08
SS18-204ENST00000539244 RAB4AP20338 218 aa8.28□□□□□ -1.08
SS18-204ENST00000539244 RNF151Q2KHN1 245 aa8.28□□□□□ -1.08
SS18-204ENST00000539244 UBE2D4Q9Y2X8 147 aa8.28□□□□□ -1.08
SS18-204ENST00000539244 HIGD1CA8MV81 97 aa8.27□□□□□ -1.09
SS18-204ENST00000539244 VCYO14598 125 aa8.27□□□□□ -1.09
SS18-204ENST00000539244 SMAGPQ0VAQ4 97 aa8.27□□□□□ -1.09
SS18-204ENST00000539244 TSKUQ8WUA8 353 aa8.27□□□□□ -1.09
SS18-204ENST00000539244 RPL18AQ02543 176 aaKnown RBP8.26□□□□□ -1.09
SS18-204ENST00000539244 C1orf137Q5JT78 98 aa8.26□□□□□ -1.09
SS18-204ENST00000539244 PHF5AQ7RTV0 110 aaKnown RBP8.26□□□□□ -1.09
SS18-204ENST00000539244 AMN1Q8IY45 258 aa8.26□□□□□ -1.09
SS18-204ENST00000539244 TCTE3Q8IZS6 198 aa8.26□□□□□ -1.09
SS18-204ENST00000539244 TRAV13-1A0A0B4J241 112 aa8.25□□□□□ -1.09
SS18-204ENST00000539244 PPP1R17O96001 155 aa8.25□□□□□ -1.09
SS18-204ENST00000539244 FCER1GP30273 86 aa8.25□□□□□ -1.09
SS18-204ENST00000539244 C5orf38Q86SI9 138 aa8.25□□□□□ -1.09
SS18-204ENST00000539244 NRACQ8N912 160 aa8.25□□□□□ -1.09
SS18-204ENST00000539244 TIMM21Q9BVV7 248 aa8.25□□□□□ -1.09
SS18-204ENST00000539244 F8WDY8 70 aa8.24□□□□□ -1.09
SS18-204ENST00000539244 IGLV7-43P04211 117 aa8.24□□□□□ -1.09
SS18-204ENST00000539244 SUMO2P61956 95 aaKnown RBP8.24□□□□□ -1.09
SS18-204ENST00000539244 SPAG11BQ08648 103 aa8.24□□□□□ -1.09
SS18-204ENST00000539244 RNASE13Q5GAN3 156 aaKnown RBP8.24□□□□□ -1.09
SS18-204ENST00000539244 LINC01551Q86U37 167 aa8.24□□□□□ -1.09
SS18-204ENST00000539244 OR10D4PQ8NGN7 298 aa8.24□□□□□ -1.09
SS18-204ENST00000539244 DIRC1Q969H9 104 aa8.24□□□□□ -1.09
SS18-204ENST00000539244 KIR2DL4Q99706 377 aa8.24□□□□□ -1.09
SS18-204ENST00000539244 MRPL35Q9NZE8 188 aaKnown RBP8.24□□□□□ -1.09
SS18-204ENST00000539244 Q6ZUT4 128 aa8.23□□□□□ -1.09
SS18-204ENST00000539244 PRR26Q8N8Z3 221 aa8.23□□□□□ -1.09
SS18-204ENST00000539244 OPRPNQ99935 248 aaPredicted RBP8.23□□□□□ -1.09
SS18-204ENST00000539244 OSTCQ9NRP0 149 aa8.23□□□□□ -1.09
SS18-204ENST00000539244 SMKR1H3BMG3 65 aa8.22□□□□□ -1.09
SS18-204ENST00000539244 PPP1R2P9O14990 202 aa8.22□□□□□ -1.09
SS18-204ENST00000539244 BLOC1S1P78537 153 aa8.22□□□□□ -1.09
SS18-204ENST00000539244 H0Y9J4 135 aa8.21□□□□□ -1.1
SS18-204ENST00000539244 TLX1NBP0CAT3 122 aa8.21□□□□□ -1.1
SS18-204ENST00000539244 RIGQ13278 110 aa8.21□□□□□ -1.1
SS18-204ENST00000539244 TMEM18Q96B42 140 aa8.21□□□□□ -1.1
SS18-204ENST00000539244 IMMP2LQ96T52 175 aa8.21□□□□□ -1.1
SS18-204ENST00000539244 SMIM7Q9BQ49 75 aa8.21□□□□□ -1.1
SS18-204ENST00000539244 IGLV1-50A0A075B6I6 118 aa8.2□□□□□ -1.1
SS18-204ENST00000539244 IGHV3OR16-9A0A0B4J2B5 98 aa8.2□□□□□ -1.1
SS18-204ENST00000539244 RPL32P62910 135 aaKnown RBP8.2□□□□□ -1.1
SS18-204ENST00000539244 KRTAP11-1Q8IUC1 163 aa8.2□□□□□ -1.1
SS18-204ENST00000539244 FAM104AQ969W3 186 aa8.2□□□□□ -1.1
SS18-204ENST00000539244 V9GYV3 84 aa8.2□□□□□ -1.1
SS18-204ENST00000539244 A0A087WZ39 114 aa8.19□□□□□ -1.1
SS18-204ENST00000539244 NDUFA1O15239 70 aa8.19□□□□□ -1.1
SS18-204ENST00000539244 TCAPO15273 167 aa8.19□□□□□ -1.1
SS18-204ENST00000539244 KRTAP1-4P0C5Y4 121 aa8.19□□□□□ -1.1
SS18-204ENST00000539244 CEBPGP53567 150 aa8.19□□□□□ -1.1
SS18-204ENST00000539244 TMEM241Q24JQ0 296 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms