RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 TMEM242Q9NWH2 141 aa5.29□□□□□ -1.56
USP28-203ENST00000537490 IGHV1-58A0A0C4DH39 117 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 TMEM250H0YL14 139 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 CEBPGP53567 150 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 POLR2KP53803 58 aaKnown RBP5.28□□□□□ -1.56
USP28-203ENST00000537490 PRR3P79522 188 aaKnown RBP5.28□□□□□ -1.56
USP28-203ENST00000537490 ODF1Q14990 250 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 TMEM101Q96IK0 257 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 BTF3L4Q96K17 158 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 LINC01600Q96MT4 127 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 ST20Q9HBF5 79 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 CDC42SE2Q9NRR3 84 aa5.28□□□□□ -1.56
USP28-203ENST00000537490 RAB4AP20338 218 aa5.27□□□□□ -1.57
USP28-203ENST00000537490 BLOC1S1P78537 153 aa5.27□□□□□ -1.57
USP28-203ENST00000537490 CT83Q5H943 113 aa5.27□□□□□ -1.57
USP28-203ENST00000537490 ALKAL2Q6UX46 152 aa5.27□□□□□ -1.57
USP28-203ENST00000537490 MRAP2Q96G30 205 aa5.27□□□□□ -1.57
USP28-203ENST00000537490 TMEM191AQ9H0A3 160 aa5.27□□□□□ -1.57
USP28-203ENST00000537490 UBR4Q5T4S7 5183 aa5.27□□□□□ -1.57
USP28-203ENST00000537490 A0A1B0GUT8 65 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 HIGD1CA8MV81 97 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 SYCNQ0VAF6 134 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 SS18Q15532 418 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 XP32Q5T750 250 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 CD164L2Q6UWJ8 174 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 MRPL52Q86TS9 123 aaKnown RBP5.26□□□□□ -1.57
USP28-203ENST00000537490 LINC01551Q86U37 167 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 AMN1Q8IY45 258 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 ZNF664Q8N3J9 261 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 TSKUQ8WUA8 353 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 BORCS7Q96B45 105 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 CARD19Q96LW7 228 aa5.26□□□□□ -1.57
USP28-203ENST00000537490 TRBV27A0A0K0K1C4 114 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 C7orf77A4D0Y5 90 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 SMKR1H3BMG3 65 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 ZNF561-AS1K7EIQ3 104 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 KRTAP10-8P60410 259 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 SRSF9Q13242 221 aaKnown RBP eCLIP5.25□□□□□ -1.57
USP28-203ENST00000537490 FAM210AQ96ND0 272 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 SMIM7Q9BQ49 75 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 OSTCQ9NRP0 149 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 LINC00474Q9P2X8 69 aa5.25□□□□□ -1.57
USP28-203ENST00000537490 IGLV4-69A0A075B6H9 119 aa5.24□□□□□ -1.57
USP28-203ENST00000537490 A0A0J9YXV3 536 aa5.24□□□□□ -1.57
USP28-203ENST00000537490 A0A1W2PNN7 141 aa5.24□□□□□ -1.57
USP28-203ENST00000537490 VCYO14598 125 aa5.24□□□□□ -1.57
USP28-203ENST00000537490 GAGE2BQ13066 116 aa5.24□□□□□ -1.57
USP28-203ENST00000537490 RNASE13Q5GAN3 156 aaKnown RBP5.24□□□□□ -1.57
USP28-203ENST00000537490 SPINK6Q6UWN8 80 aa5.24□□□□□ -1.57
USP28-203ENST00000537490 EIF5A2Q9GZV4 153 aaKnown RBP5.24□□□□□ -1.57
USP28-203ENST00000537490 ZNF727A8MUV8 499 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 SRP19P09132 144 aaKnown RBP5.23□□□□□ -1.57
USP28-203ENST00000537490 CAMPP49913 170 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 PTTG1IPP53801 180 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 Q6ZRP5 223 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 AKAP14Q86UN6 197 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 NRACQ8N912 160 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 NUP35Q8NFH5 326 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 PKIGQ9Y2B9 76 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 UBE2D4Q9Y2X8 147 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 V9GYV3 84 aa5.23□□□□□ -1.57
USP28-203ENST00000537490 TNXBP22105 4242 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 hCG_2014768A0A024R1R8 64 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 TRAV13-1A0A0B4J241 112 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 LOC107984640A0A0U1RRK4 108 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 C1orf196B1AJZ1 125 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 COX7A2LO14548 114 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 MALP21145 153 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 FCER1GP30273 86 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 SUMO2P61956 95 aaKnown RBP5.22□□□□□ -1.57
USP28-203ENST00000537490 RIGQ13278 110 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 REG3GQ6UW15 175 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 C5orf38Q86SI9 138 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 KRTAP4-8Q9BYQ9 185 aa5.22□□□□□ -1.57
USP28-203ENST00000537490 CSDC2Q9Y534 153 aaKnown RBP5.22□□□□□ -1.57
USP28-203ENST00000537490 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.21□□□□□ -1.58
USP28-203ENST00000537490 MRPL51Q4U2R6 128 aaKnown RBP5.21□□□□□ -1.58
USP28-203ENST00000537490 FAM104BQ5XKR9 115 aa5.21□□□□□ -1.58
USP28-203ENST00000537490 Q6ZUT4 128 aa5.21□□□□□ -1.58
USP28-203ENST00000537490 ISOC2Q96AB3 205 aa5.21□□□□□ -1.58
USP28-203ENST00000537490 CAMK2N2Q96S95 79 aa5.21□□□□□ -1.58
USP28-203ENST00000537490 APOMO95445 188 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 PPP1R17O96001 155 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 RPL23P62829 140 aaKnown RBP5.2□□□□□ -1.58
USP28-203ENST00000537490 TMEM241Q24JQ0 296 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 C9orf116Q5BN46 136 aaPredicted RBP5.2□□□□□ -1.58
USP28-203ENST00000537490 FAM104AQ969W3 186 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 C2orf48Q96LS8 159 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 KIR2DL4Q99706 377 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 OPRPNQ99935 248 aaPredicted RBP5.2□□□□□ -1.58
USP28-203ENST00000537490 TIMM21Q9BVV7 248 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 NAT8BQ9UHF3 227 aa5.2□□□□□ -1.58
USP28-203ENST00000537490 C9JQL5 133 aa5.19□□□□□ -1.58
USP28-203ENST00000537490 PPP1R2P9O14990 202 aa5.19□□□□□ -1.58
USP28-203ENST00000537490 EIF4EBP3O60516 100 aaPredicted RBP5.19□□□□□ -1.58
USP28-203ENST00000537490 RPL39P62891 51 aaKnown RBP5.19□□□□□ -1.58
USP28-203ENST00000537490 SMAGPQ0VAQ4 97 aa5.19□□□□□ -1.58
USP28-203ENST00000537490 FAM74A3Q4VXF1 159 aa5.19□□□□□ -1.58
USP28-203ENST00000537490 PHF5AQ7RTV0 110 aaKnown RBP5.19□□□□□ -1.58
USP28-203ENST00000537490 MRPL18Q9H0U6 180 aaKnown RBP5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms