RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 RPL39P62891 51 aaKnown RBP3.23□□□□□ -1.89
USH1C-210ENST00000534556 HIGD2BQ4VC39 106 aa3.23□□□□□ -1.89
USH1C-210ENST00000534556 RNASEKQ6P5S7 137 aaKnown RBP3.23□□□□□ -1.89
USH1C-210ENST00000534556 Q6ZUT4 128 aa3.23□□□□□ -1.89
USH1C-210ENST00000534556 SMIM15Q7Z3B0 74 aa3.23□□□□□ -1.89
USH1C-210ENST00000534556 MRPL52Q86TS9 123 aaKnown RBP3.23□□□□□ -1.89
USH1C-210ENST00000534556 LINC00528Q8N1L1 170 aa3.23□□□□□ -1.89
USH1C-210ENST00000534556 OR5A1Q8NGJ0 315 aa3.23□□□□□ -1.89
USH1C-210ENST00000534556 CHCHD10Q8WYQ3 142 aaPredicted RBP3.23□□□□□ -1.89
USH1C-210ENST00000534556 OPRPNQ99935 248 aaPredicted RBP3.23□□□□□ -1.89
USH1C-210ENST00000534556 CDC42SE2Q9NRR3 84 aa3.23□□□□□ -1.89
USH1C-210ENST00000534556 UBE2D4Q9Y2X8 147 aa3.23□□□□□ -1.89
USH1C-210ENST00000534556 H7C423 109 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 UBE2L6O14933 153 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 TCAPO15273 167 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 CCL25O15444 150 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 CNBPP62633 177 aaKnown RBP3.22□□□□□ -1.89
USH1C-210ENST00000534556 CIRBPQ14011 172 aaKnown RBP3.22□□□□□ -1.89
USH1C-210ENST00000534556 ZC2HC1BQ5TFG8 222 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 DGAT2L7PQ6IED9 249 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.22□□□□□ -1.89
USH1C-210ENST00000534556 BORCS7Q96B45 105 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 HMCN2Q8NDA2 5059 aa3.22□□□□□ -1.89
USH1C-210ENST00000534556 hDV102S1A0JD36 115 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 TMEM218A2RU14 115 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 C7orf77A4D0Y5 90 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 VCYO14598 125 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 ZNF25P17030 456 aaPredicted RBP3.21□□□□□ -1.9
USH1C-210ENST00000534556 CKS2P33552 79 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 XCL1P47992 114 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 RPL32P62910 135 aaKnown RBP3.21□□□□□ -1.9
USH1C-210ENST00000534556 HBBP68871 147 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 C14orf177Q52M58 125 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 AMMECR1LQ6DCA0 310 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 ZNF664Q8N3J9 261 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 PRSS3P2Q8NHM4 247 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 SMIM2Q9BVW6 85 aa3.21□□□□□ -1.9
USH1C-210ENST00000534556 A0A087WYN8 130 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 GVQW2A0A096LPI5 108 aaPredicted RBP3.2□□□□□ -1.9
USH1C-210ENST00000534556 A0A1B0GW15 77 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 LINC00862A6NCI5 91 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 PRSS47A8MTI9 375 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 FAM229AH3BQW9 127 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 COX6A2Q02221 97 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 KIAA1644Q3SXP7 199 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 C10orf91Q5T1B1 145 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 TMEM136Q6ZRR5 245 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 LINC00173Q6ZV60 143 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 CLRN3Q8NCR9 226 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 PRELID3AQ96N28 172 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 C20orf78Q9BR46 151 aa3.2□□□□□ -1.9
USH1C-210ENST00000534556 CSDC2Q9Y534 153 aaKnown RBP3.2□□□□□ -1.9
USH1C-210ENST00000534556 A0A096LNI7 61 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 LOC389332A0A1B0GUA5 103 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 F8W036 122 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 PPP1R2P9O14990 202 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 FCER1GP30273 86 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 RAB14P61106 215 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 PNRC1Q12796 327 aaPredicted RBP3.19□□□□□ -1.9
USH1C-210ENST00000534556 CD164L2Q6UWJ8 174 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 ATP5L2Q7Z4Y8 100 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 C5orf38Q86SI9 138 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 COMMD7Q86VX2 200 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 SPACA4Q8TDM5 124 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 ANAPC16Q96DE5 110 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 IMMP2LQ96T52 175 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 TIMM21Q9BVV7 248 aa3.19□□□□□ -1.9
USH1C-210ENST00000534556 IGLV4-69A0A075B6H9 119 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 IGLV4-3A0A075B6K6 122 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 IGHV3-64A0A075B6Q5 118 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 TRAV13-1A0A0B4J241 112 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 IGHV3OR16-9A0A0B4J2B5 98 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 A0A0J9YXV3 536 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 PHOX2AO14813 284 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 MT-ND4LP03901 98 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 C10orf25Q5T742 122 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 Q6ZRU5 148 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 ORMDL3Q8N138 153 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 TMEM101Q96IK0 257 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 BTF3L4Q96K17 158 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 SEC11CQ9BY50 192 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 PLAC8Q9NZF1 115 aa3.18□□□□□ -1.9
USH1C-210ENST00000534556 IGHV1-58A0A0C4DH39 117 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 IGKV2-24A0A0C4DH68 120 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 PPP1R17O96001 155 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 PPBPP02775 128 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 MT1HL1P0DM35 61 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 IFI27P40305 119 aaPredicted RBP3.17□□□□□ -1.9
USH1C-210ENST00000534556 MRPS36P82909 103 aaKnown RBP3.17□□□□□ -1.9
USH1C-210ENST00000534556 KIAA0087Q14695 138 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 SS18Q15532 418 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 LINC00242Q5T6M2 205 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 UQCC3Q6UW78 93 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 KRTAP11-1Q8IUC1 163 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 KRTAP7-1Q8IUC3 87 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 Q8N8P6 123 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 URB1-AS1Q96HZ7 61 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 KIR2DL4Q99706 377 aa3.17□□□□□ -1.9
USH1C-210ENST00000534556 CARHSP1Q9Y2V2 147 aaKnown RBP3.17□□□□□ -1.9
USH1C-210ENST00000534556 RNF213Q63HN8 5207 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms