RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 AMN1Q8IY45 258 aa9.05□□□□□ -0.96
CPSF1-201ENST00000526271 TGIF2-C20orf24A0A0A6YYL0 155 aa9.04□□□□□ -0.96
CPSF1-201ENST00000526271 MIAQ16674 131 aa9.04□□□□□ -0.96
CPSF1-201ENST00000526271 MRPL51Q4U2R6 128 aaKnown RBP9.04□□□□□ -0.96
CPSF1-201ENST00000526271 TMEM136Q6ZRR5 245 aa9.04□□□□□ -0.96
CPSF1-201ENST00000526271 Q6ZRU5 148 aa9.04□□□□□ -0.96
CPSF1-201ENST00000526271 CBLN2Q8IUK8 224 aa9.04□□□□□ -0.96
CPSF1-201ENST00000526271 H7C1H1 209 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 CRPP02741 224 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 GAGE6Q13070 117 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 COX19Q49B96 90 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 TMEM97Q5BJF2 176 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 LINC00269Q8N2A0 174 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 C20orf203Q8NBC4 194 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 MRAP2Q96G30 205 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 GNB1LQ9BYB4 327 aa9.03□□□□□ -0.96
CPSF1-201ENST00000526271 TRAV26-2A0A0B4J265 109 aa9.02□□□□□ -0.97
CPSF1-201ENST00000526271 GAS8-AS1O95177 125 aa9.02□□□□□ -0.97
CPSF1-201ENST00000526271 CNBPP62633 177 aaKnown RBP9.02□□□□□ -0.97
CPSF1-201ENST00000526271 CHCHD5Q9BSY4 110 aa9.02□□□□□ -0.97
CPSF1-201ENST00000526271 NIT2Q9NQR4 276 aa9.02□□□□□ -0.97
CPSF1-201ENST00000526271 LPAP08519 4548 aa9.02□□□□□ -0.97
CPSF1-201ENST00000526271 IGLV10-54A0A075B6I4 117 aa9.01□□□□□ -0.97
CPSF1-201ENST00000526271 A0A087WYN8 130 aa9.01□□□□□ -0.97
CPSF1-201ENST00000526271 IGLV4-60A0A075B6I1 120 aa9□□□□□ -0.97
CPSF1-201ENST00000526271 TRBV6-5A0A0K0K1A5 114 aa9□□□□□ -0.97
CPSF1-201ENST00000526271 SCO1O75880 301 aa9□□□□□ -0.97
CPSF1-201ENST00000526271 NRACQ8N912 160 aa9□□□□□ -0.97
CPSF1-201ENST00000526271 SPACA4Q8TDM5 124 aa9□□□□□ -0.97
CPSF1-201ENST00000526271 COLCA2A8K830 154 aa8.99□□□□□ -0.97
CPSF1-201ENST00000526271 SMKR1H3BMG3 65 aa8.99□□□□□ -0.97
CPSF1-201ENST00000526271 PPBPP02775 128 aa8.99□□□□□ -0.97
CPSF1-201ENST00000526271 MT-ND6P03923 174 aa8.99□□□□□ -0.97
CPSF1-201ENST00000526271 CKS2P33552 79 aa8.99□□□□□ -0.97
CPSF1-201ENST00000526271 RPS10P46783 165 aaKnown RBP8.99□□□□□ -0.97
CPSF1-201ENST00000526271 IQCJQ1A5X6 159 aa8.99□□□□□ -0.97
CPSF1-201ENST00000526271 RPL39LQ96EH5 51 aaKnown RBP8.99□□□□□ -0.97
CPSF1-201ENST00000526271 D6R8Y8 96 aa8.98□□□□□ -0.97
CPSF1-201ENST00000526271 PPP1R17O96001 155 aa8.98□□□□□ -0.97
CPSF1-201ENST00000526271 APCSP02743 223 aa8.98□□□□□ -0.97
CPSF1-201ENST00000526271 TRBV25-1A0A075B6N4 114 aa8.97□□□□□ -0.97
CPSF1-201ENST00000526271 PHOX2AO14813 284 aa8.97□□□□□ -0.97
CPSF1-201ENST00000526271 NCR2O95944 276 aa8.97□□□□□ -0.97
CPSF1-201ENST00000526271 POLR2KP53803 58 aaKnown RBP8.97□□□□□ -0.97
CPSF1-201ENST00000526271 REG3AQ06141 175 aa8.97□□□□□ -0.97
CPSF1-201ENST00000526271 ORMDL3Q8N138 153 aa8.97□□□□□ -0.97
CPSF1-201ENST00000526271 C15orf56Q8N910 161 aa8.97□□□□□ -0.97
CPSF1-201ENST00000526271 MRPL18Q9H0U6 180 aaKnown RBP8.97□□□□□ -0.97
CPSF1-201ENST00000526271 PLAC8Q9NZF1 115 aa8.97□□□□□ -0.97
CPSF1-201ENST00000526271 PRSS47A8MTI9 375 aa8.96□□□□□ -0.98
CPSF1-201ENST00000526271 TNFRSF6BO95407 300 aa8.96□□□□□ -0.98
CPSF1-201ENST00000526271 C20orf78Q9BR46 151 aa8.96□□□□□ -0.98
CPSF1-201ENST00000526271 ST20Q9HBF5 79 aa8.96□□□□□ -0.98
CPSF1-201ENST00000526271 TRAPPC1Q9Y5R8 145 aa8.96□□□□□ -0.98
CPSF1-201ENST00000526271 hDV102S1A0JD36 115 aa8.95□□□□□ -0.98
CPSF1-201ENST00000526271 SDHAF1A6NFY7 115 aa8.95□□□□□ -0.98
CPSF1-201ENST00000526271 RPL32P62910 135 aaKnown RBP8.95□□□□□ -0.98
CPSF1-201ENST00000526271 FABP9Q0Z7S8 132 aa8.95□□□□□ -0.98
CPSF1-201ENST00000526271 KIAA1644Q3SXP7 199 aa8.95□□□□□ -0.98
CPSF1-201ENST00000526271 PRELID3AQ96N28 172 aa8.95□□□□□ -0.98
CPSF1-201ENST00000526271 LAMTOR2Q9Y2Q5 125 aa8.95□□□□□ -0.98
CPSF1-201ENST00000526271 IGHV1-24A0A0C4DH33 117 aa8.94□□□□□ -0.98
CPSF1-201ENST00000526271 TRBV27A0A0K0K1C4 114 aa8.94□□□□□ -0.98
CPSF1-201ENST00000526271 NPYP01303 97 aa8.94□□□□□ -0.98
CPSF1-201ENST00000526271 SUMO2P61956 95 aaKnown RBP8.94□□□□□ -0.98
CPSF1-201ENST00000526271 LINC01600Q96MT4 127 aa8.94□□□□□ -0.98
CPSF1-201ENST00000526271 VCYO14598 125 aa8.93□□□□□ -0.98
CPSF1-201ENST00000526271 RAB5AP20339 215 aa8.93□□□□□ -0.98
CPSF1-201ENST00000526271 KRTAP10-8P60410 259 aa8.93□□□□□ -0.98
CPSF1-201ENST00000526271 PRSS3P2Q8NHM4 247 aa8.93□□□□□ -0.98
CPSF1-201ENST00000526271 ALKBH7Q9BT30 221 aaPredicted RBP8.93□□□□□ -0.98
CPSF1-201ENST00000526271 IGHV3-64A0A075B6Q5 118 aa8.92□□□□□ -0.98
CPSF1-201ENST00000526271 A0A1B0GUV1 79 aa8.92□□□□□ -0.98
CPSF1-201ENST00000526271 I3L3M4 83 aa8.92□□□□□ -0.98
CPSF1-201ENST00000526271 PRR3P79522 188 aaKnown RBP8.92□□□□□ -0.98
CPSF1-201ENST00000526271 PMCHP20382 165 aa8.91□□□□□ -0.98
CPSF1-201ENST00000526271 COX6A2Q02221 97 aa8.91□□□□□ -0.98
CPSF1-201ENST00000526271 UBE2L6O14933 153 aa8.9□□□□□ -0.98
CPSF1-201ENST00000526271 TSHBP01222 138 aa8.9□□□□□ -0.98
CPSF1-201ENST00000526271 TRGC2P03986 189 aa8.9□□□□□ -0.98
CPSF1-201ENST00000526271 COTL1Q14019 142 aa8.9□□□□□ -0.98
CPSF1-201ENST00000526271 SMIM2Q9BVW6 85 aa8.9□□□□□ -0.98
CPSF1-201ENST00000526271 TRAV8-4A0A0B4J246 113 aa8.89□□□□□ -0.99
CPSF1-201ENST00000526271 TMEM243Q9BU79 118 aa8.89□□□□□ -0.99
CPSF1-201ENST00000526271 MAP1LC3AQ9H492 121 aa8.89□□□□□ -0.99
CPSF1-201ENST00000526271 A0A0J9YXV3 536 aa8.88□□□□□ -0.99
CPSF1-201ENST00000526271 LOC389332A0A1B0GUA5 103 aa8.88□□□□□ -0.99
CPSF1-201ENST00000526271 HIGD2BQ4VC39 106 aa8.88□□□□□ -0.99
CPSF1-201ENST00000526271 Q8N8P6 123 aa8.88□□□□□ -0.99
CPSF1-201ENST00000526271 KIR2DL4Q99706 377 aa8.88□□□□□ -0.99
CPSF1-201ENST00000526271 A0A096LNI7 61 aa8.87□□□□□ -0.99
CPSF1-201ENST00000526271 GAGE12HA6NDE8 117 aa8.87□□□□□ -0.99
CPSF1-201ENST00000526271 TCAPO15273 167 aa8.87□□□□□ -0.99
CPSF1-201ENST00000526271 ESDP10768 282 aa8.87□□□□□ -0.99
CPSF1-201ENST00000526271 IGKV2-24A0A0C4DH68 120 aa8.86□□□□□ -0.99
CPSF1-201ENST00000526271 LINC01546A6NGU7 62 aa8.86□□□□□ -0.99
CPSF1-201ENST00000526271 IFI27P40305 119 aaPredicted RBP8.86□□□□□ -0.99
CPSF1-201ENST00000526271 AMTP48728 403 aa8.86□□□□□ -0.99
CPSF1-201ENST00000526271 SRSF9Q13242 221 aaKnown RBP eCLIP8.86□□□□□ -0.99
CPSF1-201ENST00000526271 C18orf32Q8TCD1 76 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms