RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 PPP1R17O96001 155 aa12.41□□□□□ -0.42
USP40-217ENST00000496298 NRACQ8N912 160 aa12.41□□□□□ -0.42
USP40-217ENST00000496298 PKHD1L1Q86WI1 4243 aa12.41□□□□□ -0.42
USP40-217ENST00000496298 IGHV3-64A0A075B6Q5 118 aa12.4□□□□□ -0.42
USP40-217ENST00000496298 VCYO14598 125 aa12.4□□□□□ -0.42
USP40-217ENST00000496298 TMEM101Q96IK0 257 aa12.4□□□□□ -0.42
USP40-217ENST00000496298 BTF3L4Q96K17 158 aa12.4□□□□□ -0.42
USP40-217ENST00000496298 FOXI1Q12951 378 aa12.39□□□□□ -0.43
USP40-217ENST00000496298 FAM104BQ5XKR9 115 aa12.39□□□□□ -0.43
USP40-217ENST00000496298 LINC00959A0A1B0GUT2 108 aa12.38□□□□□ -0.43
USP40-217ENST00000496298 A0A1B0GW15 77 aa12.38□□□□□ -0.43
USP40-217ENST00000496298 SMKR1H3BMG3 65 aa12.38□□□□□ -0.43
USP40-217ENST00000496298 CDC42SE2Q9NRR3 84 aa12.38□□□□□ -0.43
USP40-217ENST00000496298 GVQW2A0A096LPI5 108 aaPredicted RBP12.37□□□□□ -0.43
USP40-217ENST00000496298 C7orf77A4D0Y5 90 aa12.37□□□□□ -0.43
USP40-217ENST00000496298 SUMO2P61956 95 aaKnown RBP12.37□□□□□ -0.43
USP40-217ENST00000496298 MRPL51Q4U2R6 128 aaKnown RBP12.37□□□□□ -0.43
USP40-217ENST00000496298 LINC00862A6NCI5 91 aa12.36□□□□□ -0.43
USP40-217ENST00000496298 CSDC2Q9Y534 153 aaKnown RBP12.36□□□□□ -0.43
USP40-217ENST00000496298 TRBV24-1A0A075B6N3 115 aa12.35□□□□□ -0.43
USP40-217ENST00000496298 J3QL48 77 aa12.35□□□□□ -0.43
USP40-217ENST00000496298 PPP1R2P9O14990 202 aa12.35□□□□□ -0.43
USP40-217ENST00000496298 RPL37AP61513 92 aaKnown RBP12.35□□□□□ -0.43
USP40-217ENST00000496298 ZNF664Q8N3J9 261 aa12.35□□□□□ -0.43
USP40-217ENST00000496298 CCL25O15444 150 aa12.34□□□□□ -0.43
USP40-217ENST00000496298 CAMPP49913 170 aa12.34□□□□□ -0.43
USP40-217ENST00000496298 RPL32P62910 135 aaKnown RBP12.34□□□□□ -0.43
USP40-217ENST00000496298 HIGD2BQ4VC39 106 aa12.34□□□□□ -0.43
USP40-217ENST00000496298 SPACA4Q8TDM5 124 aa12.34□□□□□ -0.43
USP40-217ENST00000496298 C20orf78Q9BR46 151 aa12.34□□□□□ -0.43
USP40-217ENST00000496298 LRP1Q07954 4544 aaKnown RBP12.33□□□□□ -0.44
USP40-217ENST00000496298 FCER1GP30273 86 aa12.33□□□□□ -0.44
USP40-217ENST00000496298 XCL1P47992 114 aa12.33□□□□□ -0.44
USP40-217ENST00000496298 KIR2DL4Q99706 377 aa12.33□□□□□ -0.44
USP40-217ENST00000496298 A0A1B0GXF2 115 aa12.32□□□□□ -0.44
USP40-217ENST00000496298 CHTF8P0CG12 524 aa12.32□□□□□ -0.44
USP40-217ENST00000496298 SMAGPQ0VAQ4 97 aa12.32□□□□□ -0.44
USP40-217ENST00000496298 SS18Q15532 418 aa12.32□□□□□ -0.44
USP40-217ENST00000496298 CD164L2Q6UWJ8 174 aa12.32□□□□□ -0.44
USP40-217ENST00000496298 UBE2D4Q9Y2X8 147 aa12.32□□□□□ -0.44
USP40-217ENST00000496298 FAT3Q8TDW7 4589 aa12.32□□□□□ -0.44
USP40-217ENST00000496298 A0A087WYN8 130 aa12.31□□□□□ -0.44
USP40-217ENST00000496298 IGHV1-58A0A0C4DH39 117 aa12.31□□□□□ -0.44
USP40-217ENST00000496298 OXTP01178 125 aa12.31□□□□□ -0.44
USP40-217ENST00000496298 S100A8P05109 93 aa12.31□□□□□ -0.44
USP40-217ENST00000496298 TIMM21Q9BVV7 248 aa12.31□□□□□ -0.44
USP40-217ENST00000496298 CKS2P33552 79 aa12.3□□□□□ -0.44
USP40-217ENST00000496298 HBBP68871 147 aa12.3□□□□□ -0.44
USP40-217ENST00000496298 COX6A2Q02221 97 aa12.3□□□□□ -0.44
USP40-217ENST00000496298 PLAC8Q9NZF1 115 aa12.3□□□□□ -0.44
USP40-217ENST00000496298 C1orf196B1AJZ1 125 aa12.29□□□□□ -0.44
USP40-217ENST00000496298 F8W036 122 aa12.29□□□□□ -0.44
USP40-217ENST00000496298 TCAPO15273 167 aa12.29□□□□□ -0.44
USP40-217ENST00000496298 TNFRSF6BO95407 300 aa12.29□□□□□ -0.44
USP40-217ENST00000496298 PRSS3P2Q8NHM4 247 aa12.29□□□□□ -0.44
USP40-217ENST00000496298 HNRNPA3P51991 378 aaKnown RBP12.28□□□□□ -0.44
USP40-217ENST00000496298 MRPL54Q6P161 138 aaKnown RBP12.28□□□□□ -0.44
USP40-217ENST00000496298 DPH3Q96FX2 82 aa12.28□□□□□ -0.44
USP40-217ENST00000496298 PHOX2AO14813 284 aa12.27□□□□□ -0.45
USP40-217ENST00000496298 TMEM18Q96B42 140 aa12.27□□□□□ -0.45
USP40-217ENST00000496298 D6R8Y8 96 aa12.26□□□□□ -0.45
USP40-217ENST00000496298 PPBPP02775 128 aa12.26□□□□□ -0.45
USP40-217ENST00000496298 ATP5L2Q7Z4Y8 100 aa12.26□□□□□ -0.45
USP40-217ENST00000496298 SMIM2Q9BVW6 85 aa12.26□□□□□ -0.45
USP40-217ENST00000496298 NPYP01303 97 aa12.24□□□□□ -0.45
USP40-217ENST00000496298 FAM104AQ969W3 186 aa12.24□□□□□ -0.45
USP40-217ENST00000496298 LINC00526Q96FQ7 95 aa12.24□□□□□ -0.45
USP40-217ENST00000496298 PNRC1Q12796 327 aaPredicted RBP12.23□□□□□ -0.45
USP40-217ENST00000496298 RNASE13Q5GAN3 156 aaKnown RBP12.23□□□□□ -0.45
USP40-217ENST00000496298 Q6ZUT4 128 aa12.23□□□□□ -0.45
USP40-217ENST00000496298 PKIGQ9Y2B9 76 aa12.23□□□□□ -0.45
USP40-217ENST00000496298 A0A096LNI7 61 aa12.22□□□□□ -0.45
USP40-217ENST00000496298 ZNF561-AS1K7EIQ3 104 aa12.22□□□□□ -0.45
USP40-217ENST00000496298 COX7A2LO14548 114 aa12.22□□□□□ -0.45
USP40-217ENST00000496298 RPL39P62891 51 aaKnown RBP12.22□□□□□ -0.45
USP40-217ENST00000496298 SYCNQ0VAF6 134 aa12.22□□□□□ -0.45
USP40-217ENST00000496298 MAJINQ3KP22 176 aa12.22□□□□□ -0.45
USP40-217ENST00000496298 CARD19Q96LW7 228 aa12.22□□□□□ -0.45
USP40-217ENST00000496298 TRAV13-1A0A0B4J241 112 aa12.21□□□□□ -0.45
USP40-217ENST00000496298 IGKV2-24A0A0C4DH68 120 aa12.21□□□□□ -0.45
USP40-217ENST00000496298 RAB14P61106 215 aa12.21□□□□□ -0.45
USP40-217ENST00000496298 ORMDL3Q8N138 153 aa12.21□□□□□ -0.45
USP40-217ENST00000496298 SPANXA1Q9NS26 97 aa12.21□□□□□ -0.45
USP40-217ENST00000496298 LINC00474Q9P2X8 69 aa12.21□□□□□ -0.45
USP40-217ENST00000496298 PRSS47A8MTI9 375 aa12.2□□□□□ -0.46
USP40-217ENST00000496298 MRPS36P82909 103 aaKnown RBP12.2□□□□□ -0.46
USP40-217ENST00000496298 TMEM136Q6ZRR5 245 aa12.2□□□□□ -0.46
USP40-217ENST00000496298 STPG4Q8N801 248 aa12.2□□□□□ -0.46
USP40-217ENST00000496298 ANAPC16Q96DE5 110 aa12.2□□□□□ -0.46
USP40-217ENST00000496298 MALP21145 153 aa12.19□□□□□ -0.46
USP40-217ENST00000496298 Q6ZRU5 148 aa12.19□□□□□ -0.46
USP40-217ENST00000496298 PRELID3AQ96N28 172 aa12.19□□□□□ -0.46
USP40-217ENST00000496298 IGLV4-69A0A075B6H9 119 aa12.18□□□□□ -0.46
USP40-217ENST00000496298 MT-ND4LP03901 98 aa12.18□□□□□ -0.46
USP40-217ENST00000496298 C7orf33Q8WU49 177 aa12.18□□□□□ -0.46
USP40-217ENST00000496298 C5orf38Q86SI9 138 aa12.17□□□□□ -0.46
USP40-217ENST00000496298 C2orf48Q96LS8 159 aa12.17□□□□□ -0.46
USP40-217ENST00000496298 LAMTOR2Q9Y2Q5 125 aa12.17□□□□□ -0.46
USP40-217ENST00000496298 CLLU1Q5K131 121 aa12.16□□□□□ -0.46
USP40-217ENST00000496298 OPRPNQ99935 248 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 169 ms