RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	MRPL52	Q86TS9	123 aa	Known RBP	4.6	□□□□□ -1.67
VPS52-221	ENST00000495755	NRAC	Q8N912	160 aa		4.6	□□□□□ -1.67
VPS52-221	ENST00000495755	OR5A1	Q8NGJ0	315 aa		4.6	□□□□□ -1.67
VPS52-221	ENST00000495755	CDC42SE2	Q9NRR3	84 aa		4.6	□□□□□ -1.67
VPS52-221	ENST00000495755	TMEM242	Q9NWH2	141 aa		4.6	□□□□□ -1.67
VPS52-221	ENST00000495755	NAT8	Q9UHE5	227 aa		4.6	□□□□□ -1.67
VPS52-221	ENST00000495755	NAT8B	Q9UHF3	227 aa		4.6	□□□□□ -1.67
VPS52-221	ENST00000495755	GVQW2	A0A096LPI5	108 aa	Predicted RBP	4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	LINC00959	A0A1B0GUT2	108 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	RPL37A	P61513	92 aa	Known RBP	4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	ADIRF	Q15847	76 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	HIGD2B	Q4VC39	106 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	FAM104B	Q5XKR9	115 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	SPACA4	Q8TDM5	124 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	TMEM101	Q96IK0	257 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	BTF3L4	Q96K17	158 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755	SMDT1	Q9H4I9	107 aa		4.59	□□□□□ -1.67
VPS52-221	ENST00000495755		A0A1B0GW15	77 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	C7orf77	A4D0Y5	90 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	CCL25	O15444	150 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	PPP1R17	O96001	155 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	OXT	P01178	125 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	CHTF8	P0CG12	524 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	XCL1	P47992	114 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	HNRNPA3	P51991	378 aa	Known RBP	4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	SUMO2	P61956	95 aa	Known RBP	4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	MRPL51	Q4U2R6	128 aa	Known RBP	4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	ZNF664	Q8N3J9	261 aa		4.58	□□□□□ -1.68
VPS52-221	ENST00000495755	TRBV24-1	A0A075B6N3	115 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755		A0A087WYN8	130 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	LINC00862	A6NCI5	91 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	PPP1R2P9	O14990	202 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	FCER1G	P30273	86 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	CAMP	P49913	170 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	COX6A2	Q02221	97 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	SS18	Q15532	418 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	CD164L2	Q6UWJ8	174 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	PRSS3P2	Q8NHM4	247 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	DPH3	Q96FX2	82 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	PLAC8	Q9NZF1	115 aa		4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	CSDC2	Q9Y534	153 aa	Known RBP	4.57	□□□□□ -1.68
VPS52-221	ENST00000495755	IGHV1-58	A0A0C4DH39	117 aa		4.56	□□□□□ -1.68
VPS52-221	ENST00000495755		A0A1B0GXF2	115 aa		4.56	□□□□□ -1.68
VPS52-221	ENST00000495755	CKS2	P33552	79 aa		4.56	□□□□□ -1.68
VPS52-221	ENST00000495755	RPL32	P62910	135 aa	Known RBP	4.56	□□□□□ -1.68
VPS52-221	ENST00000495755	KIR2DL4	Q99706	377 aa		4.56	□□□□□ -1.68
VPS52-221	ENST00000495755	C20orf78	Q9BR46	151 aa		4.56	□□□□□ -1.68
VPS52-221	ENST00000495755	UBE2D4	Q9Y2X8	147 aa		4.56	□□□□□ -1.68
VPS52-221	ENST00000495755	C1orf196	B1AJZ1	125 aa		4.55	□□□□□ -1.68
VPS52-221	ENST00000495755	TNFRSF6B	O95407	300 aa		4.55	□□□□□ -1.68
VPS52-221	ENST00000495755	HBB	P68871	147 aa		4.55	□□□□□ -1.68
VPS52-221	ENST00000495755	SMAGP	Q0VAQ4	97 aa		4.55	□□□□□ -1.68
VPS52-221	ENST00000495755	MRPL54	Q6P161	138 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-221	ENST00000495755	FAM104A	Q969W3	186 aa		4.55	□□□□□ -1.68
VPS52-221	ENST00000495755	LINC00526	Q96FQ7	95 aa		4.55	□□□□□ -1.68
VPS52-221	ENST00000495755	TIMM21	Q9BVV7	248 aa		4.55	□□□□□ -1.68
VPS52-221	ENST00000495755		A0A096LNI7	61 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	IGKV2-24	A0A0C4DH68	120 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755		D6R8Y8	96 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755		F8W036	122 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	COX7A2L	O14548	114 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	TCAP	O15273	167 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	S100A8	P05109	93 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	MAJIN	Q3KP22	176 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	RNASE13	Q5GAN3	156 aa	Known RBP	4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	SMIM2	Q9BVW6	85 aa		4.54	□□□□□ -1.68
VPS52-221	ENST00000495755	TNXB	P22105	4242 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	TRAV13-1	A0A0B4J241	112 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	ZNF561-AS1	K7EIQ3	104 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	PHOX2A	O14813	284 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	NPY	P01303	97 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	PPBP	P02775	128 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	RPL39	P62891	51 aa	Known RBP	4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	SYCN	Q0VAF6	134 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755		Q6ZRU5	148 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755		Q6ZUT4	128 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	ATP5L2	Q7Z4Y8	100 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	STPG4	Q8N801	248 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	C7orf33	Q8WU49	177 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	TMEM18	Q96B42	140 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	CARD19	Q96LW7	228 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	LINC00474	Q9P2X8	69 aa		4.53	□□□□□ -1.68
VPS52-221	ENST00000495755	IGLV4-69	A0A075B6H9	119 aa		4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	MT1HL1	P0DM35	61 aa		4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	MAL	P21145	153 aa		4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	MRPS36	P82909	103 aa	Known RBP	4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	SERTAD4-AS1	Q5TG53	156 aa		4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	TMEM136	Q6ZRR5	245 aa		4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	C5orf38	Q86SI9	138 aa		4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	PKIG	Q9Y2B9	76 aa		4.52	□□□□□ -1.69
VPS52-221	ENST00000495755	IGHV3OR16-9	A0A0B4J2B5	98 aa		4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	PRSS47	A8MTI9	375 aa		4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	PNRC1	Q12796	327 aa	Predicted RBP	4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	ORMDL3	Q8N138	153 aa		4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	C2orf48	Q96LS8	159 aa		4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	PRELID3A	Q96N28	172 aa		4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	OPRPN	Q99935	248 aa	Predicted RBP	4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	SPANXA1	Q9NS26	97 aa		4.51	□□□□□ -1.69
VPS52-221	ENST00000495755	MT-ND4L	P03901	98 aa		4.5	□□□□□ -1.69
VPS52-221	ENST00000495755	PTTG1IP	P53801	180 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms