RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 TMEM14EPQ6UXP3 125 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 SNX29P2Q8IUI4 249 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 C15orf40Q8WUR7 153 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 SMIM8Q96KF7 97 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 AQP10Q96PS8 301 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 MED28Q9H204 178 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 PSENENQ9NZ42 101 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 EXTL2Q9UBQ6 330 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 MTFP1Q9UDX5 166 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 FLVCR2Q9UPI3 526 aa2.32□□□□□ -2.04
VPS50-214ENST00000477935 CSDC2Q9Y534 153 aaKnown RBP2.32□□□□□ -2.04
VPS50-214ENST00000477935 IGHV1-24A0A0C4DH33 117 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 IGHV1-58A0A0C4DH39 117 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 TRBV6-1A0A0K0K1D8 114 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 APOMO95445 188 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 PYYP10082 97 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 GABARAPL2P60520 117 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 RAB4BP61018 213 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 RANP62826 216 aaKnown RBP2.31□□□□□ -2.04
VPS50-214ENST00000477935 SSBP1Q04837 148 aaKnown RBP2.31□□□□□ -2.04
VPS50-214ENST00000477935 FAM74A1Q5RGS3 127 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 FAM74A4Q5TZK3 123 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 SPAG11AQ6PDA7 123 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 NTM-AS1Q6ZSK4 140 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 CMTM2Q8TAZ6 248 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 SFRP2Q96HF1 295 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 MGST2Q99735 147 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 PRRT1Q99946 306 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 DERL1Q9BUN8 251 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 NMES1Q9C002 83 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 IL36BQ9NZH7 164 aa2.31□□□□□ -2.04
VPS50-214ENST00000477935 METTL15P1P0C7V9 234 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 TAS2R30P59541 319 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 FAM229BQ4G0N7 80 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 KRTAP13-2Q52LG2 175 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 Q5W150 140 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 MIC13Q5XKP0 118 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 CLVS1Q8IUQ0 354 aaPredicted RBP2.3□□□□□ -2.04
VPS50-214ENST00000477935 LINC00526Q96FQ7 95 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 SCP2D1Q9UJQ7 156 aa2.3□□□□□ -2.04
VPS50-214ENST00000477935 FAM240BA0A1B0GVZ2 78 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 SERTM2A0A1B0GWG4 89 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 F6UZH7 168 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 GCGP01275 180 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 UBE2BP63146 152 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 RPL18AQ02543 176 aaKnown RBP2.29□□□□□ -2.04
VPS50-214ENST00000477935 IAH1Q2TAA2 248 aaPredicted RBP2.29□□□□□ -2.04
VPS50-214ENST00000477935 TMEM128Q5BJH2 165 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 DNLZQ5SXM8 178 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 COX6B2Q6YFQ2 88 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 DAND5Q8N907 189 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 FXYD5Q96DB9 178 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 FAM167A-AS1Q96KT0 104 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 BCL7BQ9BQE9 202 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 SLC25A2Q9BXI2 301 aa2.29□□□□□ -2.04
VPS50-214ENST00000477935 IGKV2D-26A0A0A0MRZ7 120 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 C19orf71A6NCJ1 209 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 UBE2L6O14933 153 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 NUPR1O60356 82 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 AKAIN1P0CW23 69 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 ESDP10768 282 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 RPL28P46779 137 aaKnown RBP2.28□□□□□ -2.04
VPS50-214ENST00000477935 MRPS10P82664 201 aaKnown RBP2.28□□□□□ -2.04
VPS50-214ENST00000477935 SMUG1Q53HV7 270 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 SPANXN2Q5MJ10 180 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 SAPCD1Q5SSQ6 148 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 TEX43Q6ZNM6 134 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 PRNTQ86SH4 94 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 NUP35Q8NFH5 326 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 OR5C1Q8NGR4 320 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 HYLS1Q96M11 299 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 IMMP2LQ96T52 175 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 TMEM243Q9BU79 118 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 OTORQ9NRC9 128 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 NDUFA12Q9UI09 145 aa2.28□□□□□ -2.04
VPS50-214ENST00000477935 KMT2DO14686 5537 aa2.28□□□□□ -2.05
VPS50-214ENST00000477935 FABP5P3A8MUU1 101 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.27□□□□□ -2.05
VPS50-214ENST00000477935 SSSCA1O60232 199 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 ARMS2P0C7Q2 107 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 BCL2P10415 239 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 TPT1P13693 172 aaKnown RBP2.27□□□□□ -2.05
VPS50-214ENST00000477935 ZNF80P51504 273 aaPredicted RBP2.27□□□□□ -2.05
VPS50-214ENST00000477935 MEF2BQ02080 365 aaPredicted RBP2.27□□□□□ -2.05
VPS50-214ENST00000477935 IL18Q14116 193 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 RNASEKQ6P5S7 137 aaKnown RBP2.27□□□□□ -2.05
VPS50-214ENST00000477935 GOLT1AQ6ZVE7 132 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 ZFP82Q8N141 532 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 OR5A1Q8NGJ0 315 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 AP3S1Q92572 193 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 UQCC1Q9NVA1 299 aa2.27□□□□□ -2.05
VPS50-214ENST00000477935 RSL24D1Q9UHA3 163 aaKnown RBP2.27□□□□□ -2.05
VPS50-214ENST00000477935 IGKV3OR2-268A0A0C4DH90 116 aa2.26□□□□□ -2.05
VPS50-214ENST00000477935 C7orf66A4D0T2 115 aa2.26□□□□□ -2.05
VPS50-214ENST00000477935 M0R381 172 aa2.26□□□□□ -2.05
VPS50-214ENST00000477935 OR7C2O60412 319 aa2.26□□□□□ -2.05
VPS50-214ENST00000477935 S100A11P31949 105 aa2.26□□□□□ -2.05
VPS50-214ENST00000477935 ZNF56Q15929 161 aa2.26□□□□□ -2.05
VPS50-214ENST00000477935 ATP6V1FQ16864 119 aa2.26□□□□□ -2.05
VPS50-214ENST00000477935 KRTAP19-6Q3LI70 58 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms