RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TMEM191AQ9H0A3 160 aa7.72□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 UBR4Q5T4S7 5183 aa7.72□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 GVQW2A0A096LPI5 108 aaPredicted RBP7.71□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 TRBV6-5A0A0K0K1A5 114 aa7.71□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 COX6A2Q02221 97 aa7.71□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 PRSS3P2Q8NHM4 247 aa7.71□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 CHCHD10Q8WYQ3 142 aaPredicted RBP7.71□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 IGKV2-29A2NJV5 120 aaPredicted RBP7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 SDHAF1A6NFY7 115 aa7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 S100A8P05109 93 aa7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 FGF6P10767 208 aa7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 ESDP10768 282 aa7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 FOXI1Q12951 378 aa7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 ANAPC16Q96DE5 110 aa7.7□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 PHOX2AO14813 284 aa7.69□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 GAS8-AS1O95177 125 aa7.69□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 PPP1R17O96001 155 aa7.69□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 MT-ND4LP03901 98 aa7.69□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 ZNF25P17030 456 aaPredicted RBP7.69□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 DPH3Q96FX2 82 aa7.69□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 MRAP2Q96G30 205 aa7.69□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 F8W036 122 aa7.68□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 I3L3M4 83 aa7.68□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 APCSP02743 223 aa7.68□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 POLR2KP53803 58 aaKnown RBP7.68□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 HIGD2BQ4VC39 106 aa7.68□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 OR5A1Q8NGJ0 315 aa7.68□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 IGKV3OR2-268A0A0C4DH90 116 aa7.67□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 LINC00959A0A1B0GUT2 108 aa7.67□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 TMEM218A2RU14 115 aa7.67□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 TSHBP01222 138 aa7.67□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 LCE2AQ5TA79 106 aaPredicted RBP7.67□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 AMMECR1LQ6DCA0 310 aa7.67□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 RNASEKQ6P5S7 137 aaKnown RBP7.67□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 A0A096LNI7 61 aa7.66□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 RAB4AP20338 218 aa7.66□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 HBBP68871 147 aa7.66□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 ATP5L2Q7Z4Y8 100 aa7.66□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 MRPL52Q86TS9 123 aaKnown RBP7.66□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 LINC01600Q96MT4 127 aa7.66□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 ST20Q9HBF5 79 aa7.66□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 TRBV27A0A0K0K1C4 114 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 LINC00862A6NCI5 91 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 PMCHP20382 165 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 CAMPP49913 170 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 PRR3P79522 188 aaKnown RBP7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 MAJINQ3KP22 176 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 FAM104BQ5XKR9 115 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 COMMD7Q86VX2 200 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 AMN1Q8IY45 258 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 STPG4Q8N801 248 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 C7orf33Q8WU49 177 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 SEC11CQ9BY50 192 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 CDC42SE2Q9NRR3 84 aa7.65□□□□□ -1.18
MSH5-SAPCD1-205ENST00000476085 LRP2P98164 4655 aa7.64□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 IGKV2-24A0A0C4DH68 120 aa7.64□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 CCL25O15444 150 aa7.64□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 IGHV1-58A0A0C4DH39 117 aa7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 XCL1P47992 114 aa7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 SRSF9Q13242 221 aaKnown RBP eCLIP7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 MRPL54Q6P161 138 aaKnown RBP7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 CD164L2Q6UWJ8 174 aa7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 IMMP2LQ96T52 175 aa7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 CTDSP1Q9GZU7 261 aa7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 TMEM242Q9NWH2 141 aa7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 LINC00474Q9P2X8 69 aa7.63□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 A0A1B0GXF2 115 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 VCYO14598 125 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 TCAPO15273 167 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 PPBPP02775 128 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 CKS2P33552 79 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 KRTAP10-8P60410 259 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 MRPL51Q4U2R6 128 aaKnown RBP7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 ZNF664Q8N3J9 261 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 LINC00526Q96FQ7 95 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 TMEM101Q96IK0 257 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 BTF3L4Q96K17 158 aa7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 CSDC2Q9Y534 153 aaKnown RBP7.62□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 ADCYAP1P18509 176 aa7.61□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 SUMO2P61956 95 aaKnown RBP7.61□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 NRACQ8N912 160 aa7.61□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 KIR2DL4Q99706 377 aa7.61□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 C20orf78Q9BR46 151 aa7.61□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 TRBV24-1A0A075B6N3 115 aa7.6□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 C7orf77A4D0Y5 90 aa7.6□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 SMAGPQ0VAQ4 97 aa7.6□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 SS18Q15532 418 aa7.6□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 SPINK6Q6UWN8 80 aa7.6□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 CARD19Q96LW7 228 aa7.6□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 TRAV9-1A0A075B6T8 112 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 A0A0J9YXV3 536 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 SMKR1H3BMG3 65 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 S100PP25815 95 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 FCER1GP30273 86 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 RPL32P62910 135 aaKnown RBP7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 SYCNQ0VAF6 134 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 ORMDL3Q8N138 153 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 FAM104AQ969W3 186 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 PKIGQ9Y2B9 76 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms