RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ESDP10768 282 aa8.91□□□□□ -0.98
USP4-206ENST00000461553 XCL1P47992 114 aa8.91□□□□□ -0.98
USP4-206ENST00000461553 RPL23P62829 140 aaKnown RBP8.91□□□□□ -0.98
USP4-206ENST00000461553 SPACA4Q8TDM5 124 aa8.91□□□□□ -0.98
USP4-206ENST00000461553 NAT8Q9UHE5 227 aa8.91□□□□□ -0.98
USP4-206ENST00000461553 CCL25O15444 150 aa8.9□□□□□ -0.98
USP4-206ENST00000461553 OXTP01178 125 aa8.9□□□□□ -0.98
USP4-206ENST00000461553 FCER1GP30273 86 aa8.9□□□□□ -0.98
USP4-206ENST00000461553 POLR2KP53803 58 aaKnown RBP8.9□□□□□ -0.98
USP4-206ENST00000461553 FOXI1Q12951 378 aa8.9□□□□□ -0.98
USP4-206ENST00000461553 DPH3Q96FX2 82 aa8.9□□□□□ -0.98
USP4-206ENST00000461553 A0A087WYN8 130 aa8.89□□□□□ -0.99
USP4-206ENST00000461553 LINC00959A0A1B0GUT2 108 aa8.89□□□□□ -0.99
USP4-206ENST00000461553 SMKR1H3BMG3 65 aa8.89□□□□□ -0.99
USP4-206ENST00000461553 PPP1R2P9O14990 202 aa8.89□□□□□ -0.99
USP4-206ENST00000461553 SMAGPQ0VAQ4 97 aa8.89□□□□□ -0.99
USP4-206ENST00000461553 PEA15Q15121 130 aa8.89□□□□□ -0.99
USP4-206ENST00000461553 SS18Q15532 418 aa8.89□□□□□ -0.99
USP4-206ENST00000461553 MRPL52Q86TS9 123 aaKnown RBP8.89□□□□□ -0.99
USP4-206ENST00000461553 VCYO14598 125 aa8.88□□□□□ -0.99
USP4-206ENST00000461553 SUMO2P61956 95 aaKnown RBP8.88□□□□□ -0.99
USP4-206ENST00000461553 COX6A2Q02221 97 aa8.88□□□□□ -0.99
USP4-206ENST00000461553 KIR2DL4Q99706 377 aa8.88□□□□□ -0.99
USP4-206ENST00000461553 PKIGQ9Y2B9 76 aa8.88□□□□□ -0.99
USP4-206ENST00000461553 IGHV1-58A0A0C4DH39 117 aa8.87□□□□□ -0.99
USP4-206ENST00000461553 IGKV2-24A0A0C4DH68 120 aa8.87□□□□□ -0.99
USP4-206ENST00000461553 A0A1B0GW15 77 aa8.87□□□□□ -0.99
USP4-206ENST00000461553 HNRNPA3P51991 378 aaKnown RBP8.87□□□□□ -0.99
USP4-206ENST00000461553 ZNF664Q8N3J9 261 aa8.87□□□□□ -0.99
USP4-206ENST00000461553 NRACQ8N912 160 aa8.87□□□□□ -0.99
USP4-206ENST00000461553 SMDT1Q9H4I9 107 aa8.87□□□□□ -0.99
USP4-206ENST00000461553 CDC42SE2Q9NRR3 84 aa8.87□□□□□ -0.99
USP4-206ENST00000461553 SMIM27A0A1W2PRY6 76 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 C9JQL5 133 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 CAMPP49913 170 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 FAM104BQ5XKR9 115 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 CD164L2Q6UWJ8 174 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 C7orf33Q8WU49 177 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 CARD19Q96LW7 228 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 HMCN2Q8NDA2 5059 aa8.86□□□□□ -0.99
USP4-206ENST00000461553 S100A8P05109 93 aa8.85□□□□□ -0.99
USP4-206ENST00000461553 SRSF3P84103 164 aaKnown RBP8.85□□□□□ -0.99
USP4-206ENST00000461553 MAJINQ3KP22 176 aa8.85□□□□□ -0.99
USP4-206ENST00000461553 MRPL51Q4U2R6 128 aaKnown RBP8.85□□□□□ -0.99
USP4-206ENST00000461553 PRSS3P2Q8NHM4 247 aa8.85□□□□□ -0.99
USP4-206ENST00000461553 TMEM18Q96B42 140 aa8.85□□□□□ -0.99
USP4-206ENST00000461553 PLAC8Q9NZF1 115 aa8.85□□□□□ -0.99
USP4-206ENST00000461553 LINC00862A6NCI5 91 aa8.84□□□□□ -0.99
USP4-206ENST00000461553 ZNF561-AS1K7EIQ3 104 aa8.84□□□□□ -0.99
USP4-206ENST00000461553 UBE2D4Q9Y2X8 147 aa8.84□□□□□ -0.99
USP4-206ENST00000461553 CSDC2Q9Y534 153 aaKnown RBP8.84□□□□□ -0.99
USP4-206ENST00000461553 F8W036 122 aa8.83□□□□□ -1
USP4-206ENST00000461553 TCAPO15273 167 aa8.83□□□□□ -1
USP4-206ENST00000461553 MALP21145 153 aa8.83□□□□□ -1
USP4-206ENST00000461553 CKS2P33552 79 aa8.83□□□□□ -1
USP4-206ENST00000461553 HBBP68871 147 aa8.83□□□□□ -1
USP4-206ENST00000461553 MRPL54Q6P161 138 aaKnown RBP8.83□□□□□ -1
USP4-206ENST00000461553 C20orf78Q9BR46 151 aa8.83□□□□□ -1
USP4-206ENST00000461553 LINC00474Q9P2X8 69 aa8.83□□□□□ -1
USP4-206ENST00000461553 A0A096LNI7 61 aa8.82□□□□□ -1
USP4-206ENST00000461553 C1orf196B1AJZ1 125 aa8.82□□□□□ -1
USP4-206ENST00000461553 PHOX2AO14813 284 aa8.82□□□□□ -1
USP4-206ENST00000461553 RNASE13Q5GAN3 156 aaKnown RBP8.82□□□□□ -1
USP4-206ENST00000461553 SERTAD4-AS1Q5TG53 156 aa8.82□□□□□ -1
USP4-206ENST00000461553 Q6ZUT4 128 aa8.82□□□□□ -1
USP4-206ENST00000461553 STPG4Q8N801 248 aa8.82□□□□□ -1
USP4-206ENST00000461553 LINC00526Q96FQ7 95 aa8.82□□□□□ -1
USP4-206ENST00000461553 TRBV24-1A0A075B6N3 115 aa8.81□□□□□ -1
USP4-206ENST00000461553 TRAV13-1A0A0B4J241 112 aa8.81□□□□□ -1
USP4-206ENST00000461553 D6R8Y8 96 aa8.81□□□□□ -1
USP4-206ENST00000461553 COX7A2LO14548 114 aa8.81□□□□□ -1
USP4-206ENST00000461553 RPL32P62910 135 aaKnown RBP8.81□□□□□ -1
USP4-206ENST00000461553 Q6ZRU5 148 aa8.81□□□□□ -1
USP4-206ENST00000461553 SMIM2Q9BVW6 85 aa8.81□□□□□ -1
USP4-206ENST00000461553 TNFRSF6BO95407 300 aa8.8□□□□□ -1
USP4-206ENST00000461553 SYCNQ0VAF6 134 aa8.8□□□□□ -1
USP4-206ENST00000461553 TIMM21Q9BVV7 248 aa8.8□□□□□ -1
USP4-206ENST00000461553 A0A1B0GXF2 115 aa8.79□□□□□ -1
USP4-206ENST00000461553 ATP5L2Q7Z4Y8 100 aa8.79□□□□□ -1
USP4-206ENST00000461553 IGLV4-69A0A075B6H9 119 aa8.78□□□□□ -1
USP4-206ENST00000461553 APOMO95445 188 aa8.78□□□□□ -1
USP4-206ENST00000461553 NPYP01303 97 aa8.78□□□□□ -1
USP4-206ENST00000461553 PPBPP02775 128 aa8.78□□□□□ -1
USP4-206ENST00000461553 RPL39P62891 51 aaKnown RBP8.78□□□□□ -1
USP4-206ENST00000461553 PRR3P79522 188 aaKnown RBP8.78□□□□□ -1
USP4-206ENST00000461553 SPANXA1Q9NS26 97 aa8.78□□□□□ -1
USP4-206ENST00000461553 TNXBP22105 4242 aa8.78□□□□□ -1
USP4-206ENST00000461553 LOC107984640A0A0U1RRK4 108 aa8.77□□□□□ -1.01
USP4-206ENST00000461553 ORMDL3Q8N138 153 aa8.77□□□□□ -1.01
USP4-206ENST00000461553 CAMK2N2Q96S95 79 aa8.77□□□□□ -1.01
USP4-206ENST00000461553 SPAG11BQ08648 103 aa8.76□□□□□ -1.01
USP4-206ENST00000461553 PTTG1IPP53801 180 aa8.75□□□□□ -1.01
USP4-206ENST00000461553 PNRC1Q12796 327 aaPredicted RBP8.75□□□□□ -1.01
USP4-206ENST00000461553 C5orf38Q86SI9 138 aa8.75□□□□□ -1.01
USP4-206ENST00000461553 IFITM10A6NMD0 228 aa8.74□□□□□ -1.01
USP4-206ENST00000461553 RAB5AP20339 215 aa8.74□□□□□ -1.01
USP4-206ENST00000461553 IFI27P40305 119 aaPredicted RBP8.74□□□□□ -1.01
USP4-206ENST00000461553 RAB14P61106 215 aa8.74□□□□□ -1.01
USP4-206ENST00000461553 MRPS36P82909 103 aaKnown RBP8.74□□□□□ -1.01
USP4-206ENST00000461553 GAGE2BQ13066 116 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms