RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 ZNF25P17030 456 aaPredicted RBP5.52□□□□□ -1.53
HDAC9-220ENST00000461409 RPS10P46783 165 aaKnown RBP5.52□□□□□ -1.53
HDAC9-220ENST00000461409 RNASEKQ6P5S7 137 aaKnown RBP5.52□□□□□ -1.53
HDAC9-220ENST00000461409 Q6ZNX1 250 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 C15orf56Q8N910 161 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 C7orf33Q8WU49 177 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 GTSF1Q8WW33 167 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 CHCHD10Q8WYQ3 142 aaPredicted RBP5.52□□□□□ -1.53
HDAC9-220ENST00000461409 BORCS7Q96B45 105 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 RPL39LQ96EH5 51 aaKnown RBP5.52□□□□□ -1.53
HDAC9-220ENST00000461409 FAM210AQ96ND0 272 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 PLAC8Q9NZF1 115 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 PKIGQ9Y2B9 76 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 PKHD1L1Q86WI1 4243 aa5.52□□□□□ -1.53
HDAC9-220ENST00000461409 GVQW2A0A096LPI5 108 aaPredicted RBP5.51□□□□□ -1.53
HDAC9-220ENST00000461409 SDHAF1A6NFY7 115 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 I3L3M4 83 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 GATCO43716 136 aaKnown RBP5.51□□□□□ -1.53
HDAC9-220ENST00000461409 NDUFS6O75380 124 aaKnown RBP5.51□□□□□ -1.53
HDAC9-220ENST00000461409 CHTF8P0CG12 524 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 PMCHP20382 165 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 BLOC1S1P78537 153 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 COX6A2Q02221 97 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 FAM231DQ6ZW35 169 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 TMEM101Q96IK0 257 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 BTF3L4Q96K17 158 aa5.51□□□□□ -1.53
HDAC9-220ENST00000461409 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.5□□□□□ -1.53
HDAC9-220ENST00000461409 TRBV6-5A0A0K0K1A5 114 aa5.5□□□□□ -1.53
HDAC9-220ENST00000461409 IGKV2-29A2NJV5 120 aaPredicted RBP5.5□□□□□ -1.53
HDAC9-220ENST00000461409 HIGD2BQ4VC39 106 aa5.5□□□□□ -1.53
HDAC9-220ENST00000461409 OR5A1Q8NGJ0 315 aa5.5□□□□□ -1.53
HDAC9-220ENST00000461409 MRAP2Q96G30 205 aa5.5□□□□□ -1.53
HDAC9-220ENST00000461409 LINC00474Q9P2X8 69 aa5.5□□□□□ -1.53
HDAC9-220ENST00000461409 XCL1P47992 114 aa5.49□□□□□ -1.53
HDAC9-220ENST00000461409 CEBPGP53567 150 aa5.49□□□□□ -1.53
HDAC9-220ENST00000461409 FOXA3P55318 350 aaPredicted RBP5.49□□□□□ -1.53
HDAC9-220ENST00000461409 FOXI1Q12951 378 aa5.49□□□□□ -1.53
HDAC9-220ENST00000461409 MAJINQ3KP22 176 aa5.49□□□□□ -1.53
HDAC9-220ENST00000461409 ST20Q9HBF5 79 aa5.49□□□□□ -1.53
HDAC9-220ENST00000461409 IGHV1-58A0A0C4DH39 117 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 IGKV2-24A0A0C4DH68 120 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 LINC00959A0A1B0GUT2 108 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 A0A1B0GUT8 65 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 FAM231BA6NCW3 169 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 PHOX2AO14813 284 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 MT1HL1P0DM35 61 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 ALKAL2Q6UX46 152 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 AKAP14Q86UN6 197 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 TSKUQ8WUA8 353 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 SMIM7Q9BQ49 75 aa5.48□□□□□ -1.53
HDAC9-220ENST00000461409 TMA7Q9Y2S6 64 aaKnown RBP5.48□□□□□ -1.53
HDAC9-220ENST00000461409 TRBV27A0A0K0K1C4 114 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 HIGD1CA8MV81 97 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 CCL25O15444 150 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 PPP1R17O96001 155 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 TSHBP01222 138 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 ESDP10768 282 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 PRR3P79522 188 aaKnown RBP5.47□□□□□ -1.53
HDAC9-220ENST00000461409 SMAGPQ0VAQ4 97 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 SS18Q15532 418 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 MRPL52Q86TS9 123 aaKnown RBP5.47□□□□□ -1.53
HDAC9-220ENST00000461409 LINC01551Q86U37 167 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 STPG4Q8N801 248 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 PRSS3P2Q8NHM4 247 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 LYPD6BQ8NI32 183 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 CARD19Q96LW7 228 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 EIF5A2Q9GZV4 153 aaKnown RBP5.47□□□□□ -1.53
HDAC9-220ENST00000461409 TMEM191AQ9H0A3 160 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 TMEM242Q9NWH2 141 aa5.47□□□□□ -1.53
HDAC9-220ENST00000461409 A0A096LNI7 61 aa5.46□□□□□ -1.54
HDAC9-220ENST00000461409 C7orf77A4D0Y5 90 aa5.46□□□□□ -1.54
HDAC9-220ENST00000461409 CD164L2Q6UWJ8 174 aa5.46□□□□□ -1.54
HDAC9-220ENST00000461409 OSTCQ9NRP0 149 aa5.46□□□□□ -1.54
HDAC9-220ENST00000461409 CDC42SE2Q9NRR3 84 aa5.46□□□□□ -1.54
HDAC9-220ENST00000461409 UBR4Q5T4S7 5183 aa5.46□□□□□ -1.54
HDAC9-220ENST00000461409 ZNF727A8MUV8 499 aa5.45□□□□□ -1.54
HDAC9-220ENST00000461409 VCYO14598 125 aa5.45□□□□□ -1.54
HDAC9-220ENST00000461409 RAB4AP20338 218 aa5.45□□□□□ -1.54
HDAC9-220ENST00000461409 FCER1GP30273 86 aa5.45□□□□□ -1.54
HDAC9-220ENST00000461409 POLR2KP53803 58 aaKnown RBP5.45□□□□□ -1.54
HDAC9-220ENST00000461409 RIGQ13278 110 aa5.45□□□□□ -1.54
HDAC9-220ENST00000461409 ZNF664Q8N3J9 261 aa5.45□□□□□ -1.54
HDAC9-220ENST00000461409 ISOC2Q96AB3 205 aa5.45□□□□□ -1.54
HDAC9-220ENST00000461409 C1orf196B1AJZ1 125 aa5.44□□□□□ -1.54
HDAC9-220ENST00000461409 GAS8-AS1O95177 125 aa5.44□□□□□ -1.54
HDAC9-220ENST00000461409 MALP21145 153 aa5.44□□□□□ -1.54
HDAC9-220ENST00000461409 CAMPP49913 170 aa5.44□□□□□ -1.54
HDAC9-220ENST00000461409 SYCNQ0VAF6 134 aa5.44□□□□□ -1.54
HDAC9-220ENST00000461409 AMN1Q8IY45 258 aa5.44□□□□□ -1.54
HDAC9-220ENST00000461409 KIR2DL4Q99706 377 aa5.44□□□□□ -1.54
HDAC9-220ENST00000461409 CSDC2Q9Y534 153 aaKnown RBP5.44□□□□□ -1.54
HDAC9-220ENST00000461409 COX7A2LO14548 114 aa5.43□□□□□ -1.54
HDAC9-220ENST00000461409 PPP1R2P9O14990 202 aa5.43□□□□□ -1.54
HDAC9-220ENST00000461409 SUMO2P61956 95 aaKnown RBP5.43□□□□□ -1.54
HDAC9-220ENST00000461409 REG3GQ6UW15 175 aa5.43□□□□□ -1.54
HDAC9-220ENST00000461409 LINC00526Q96FQ7 95 aa5.43□□□□□ -1.54
HDAC9-220ENST00000461409 LINC01600Q96MT4 127 aa5.43□□□□□ -1.54
HDAC9-220ENST00000461409 hCG_2014768A0A024R1R8 64 aa5.42□□□□□ -1.54
HDAC9-220ENST00000461409 LOC107984640A0A0U1RRK4 108 aa5.42□□□□□ -1.54
HDAC9-220ENST00000461409 TCAPO15273 167 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms