RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 RIGQ13278 110 aa13.18□□□□□ -0.3
SDC1-205ENST00000447124 HMCN2Q8NDA2 5059 aa13.17□□□□□ -0.3
SDC1-205ENST00000447124 LINC00959A0A1B0GUT2 108 aa13.17□□□□□ -0.3
SDC1-205ENST00000447124 OXTP01178 125 aa13.17□□□□□ -0.3
SDC1-205ENST00000447124 FAM74A3Q4VXF1 159 aa13.17□□□□□ -0.3
SDC1-205ENST00000447124 DPH3Q96FX2 82 aa13.17□□□□□ -0.3
SDC1-205ENST00000447124 COX6A2Q02221 97 aa13.16□□□□□ -0.3
SDC1-205ENST00000447124 NRACQ8N912 160 aa13.16□□□□□ -0.3
SDC1-205ENST00000447124 PRSS3P2Q8NHM4 247 aa13.16□□□□□ -0.3
SDC1-205ENST00000447124 SPACA4Q8TDM5 124 aa13.16□□□□□ -0.3
SDC1-205ENST00000447124 TMEM101Q96IK0 257 aa13.16□□□□□ -0.3
SDC1-205ENST00000447124 BTF3L4Q96K17 158 aa13.16□□□□□ -0.3
SDC1-205ENST00000447124 CDC42SE2Q9NRR3 84 aa13.16□□□□□ -0.3
SDC1-205ENST00000447124 GVQW2A0A096LPI5 108 aaPredicted RBP13.15□□□□□ -0.3
SDC1-205ENST00000447124 XCL1P47992 114 aa13.15□□□□□ -0.3
SDC1-205ENST00000447124 MRPL52Q86TS9 123 aaKnown RBP13.15□□□□□ -0.3
SDC1-205ENST00000447124 VCYO14598 125 aa13.14□□□□□ -0.31
SDC1-205ENST00000447124 CCL25O15444 150 aa13.14□□□□□ -0.31
SDC1-205ENST00000447124 SMIM27A0A1W2PRY6 76 aa13.13□□□□□ -0.31
SDC1-205ENST00000447124 ADIRFQ15847 76 aa13.13□□□□□ -0.31
SDC1-205ENST00000447124 NAT8Q9UHE5 227 aa13.13□□□□□ -0.31
SDC1-205ENST00000447124 NAT8BQ9UHF3 227 aa13.13□□□□□ -0.31
SDC1-205ENST00000447124 MRPL51Q4U2R6 128 aaKnown RBP13.12□□□□□ -0.31
SDC1-205ENST00000447124 FAM104BQ5XKR9 115 aa13.12□□□□□ -0.31
SDC1-205ENST00000447124 ZNF664Q8N3J9 261 aa13.12□□□□□ -0.31
SDC1-205ENST00000447124 LINC00526Q96FQ7 95 aa13.12□□□□□ -0.31
SDC1-205ENST00000447124 PLAC8Q9NZF1 115 aa13.12□□□□□ -0.31
SDC1-205ENST00000447124 C7orf77A4D0Y5 90 aa13.11□□□□□ -0.31
SDC1-205ENST00000447124 SUMO2P61956 95 aaKnown RBP13.11□□□□□ -0.31
SDC1-205ENST00000447124 PEA15Q15121 130 aa13.11□□□□□ -0.31
SDC1-205ENST00000447124 CAMPP49913 170 aa13.09□□□□□ -0.31
SDC1-205ENST00000447124 SS18Q15532 418 aa13.09□□□□□ -0.31
SDC1-205ENST00000447124 CD164L2Q6UWJ8 174 aa13.09□□□□□ -0.31
SDC1-205ENST00000447124 IGHV1-58A0A0C4DH39 117 aa13.08□□□□□ -0.32
SDC1-205ENST00000447124 IGKV2-24A0A0C4DH68 120 aa13.08□□□□□ -0.32
SDC1-205ENST00000447124 PPP1R17O96001 155 aa13.08□□□□□ -0.32
SDC1-205ENST00000447124 MAJINQ3KP22 176 aa13.08□□□□□ -0.32
SDC1-205ENST00000447124 FCER1GP30273 86 aa13.07□□□□□ -0.32
SDC1-205ENST00000447124 UBE2D4Q9Y2X8 147 aa13.07□□□□□ -0.32
SDC1-205ENST00000447124 RNASE13Q5GAN3 156 aaKnown RBP13.06□□□□□ -0.32
SDC1-205ENST00000447124 SMDT1Q9H4I9 107 aa13.06□□□□□ -0.32
SDC1-205ENST00000447124 CSDC2Q9Y534 153 aaKnown RBP13.06□□□□□ -0.32
SDC1-205ENST00000447124 TRBV24-1A0A075B6N3 115 aa13.05□□□□□ -0.32
SDC1-205ENST00000447124 A0A096LNI7 61 aa13.05□□□□□ -0.32
SDC1-205ENST00000447124 LINC00862A6NCI5 91 aa13.05□□□□□ -0.32
SDC1-205ENST00000447124 PHOX2AO14813 284 aa13.05□□□□□ -0.32
SDC1-205ENST00000447124 KIR2DL4Q99706 377 aa13.05□□□□□ -0.32
SDC1-205ENST00000447124 PPP1R2P9O14990 202 aa13.04□□□□□ -0.32
SDC1-205ENST00000447124 STPG4Q8N801 248 aa13.04□□□□□ -0.32
SDC1-205ENST00000447124 C20orf78Q9BR46 151 aa13.04□□□□□ -0.32
SDC1-205ENST00000447124 MT1HL1P0DM35 61 aa13.03□□□□□ -0.32
SDC1-205ENST00000447124 CKS2P33552 79 aa13.03□□□□□ -0.32
SDC1-205ENST00000447124 SERTAD4-AS1Q5TG53 156 aa13.03□□□□□ -0.32
SDC1-205ENST00000447124 MRPL54Q6P161 138 aaKnown RBP13.03□□□□□ -0.32
SDC1-205ENST00000447124 FAM104AQ969W3 186 aa13.03□□□□□ -0.32
SDC1-205ENST00000447124 A0A1B0GW15 77 aa13.02□□□□□ -0.33
SDC1-205ENST00000447124 A0A1B0GXF2 115 aa13.02□□□□□ -0.33
SDC1-205ENST00000447124 C1orf196B1AJZ1 125 aa13.02□□□□□ -0.33
SDC1-205ENST00000447124 TNFRSF6BO95407 300 aa13.02□□□□□ -0.33
SDC1-205ENST00000447124 RPL32P62910 135 aaKnown RBP13.02□□□□□ -0.33
SDC1-205ENST00000447124 Q6ZRU5 148 aa13.02□□□□□ -0.33
SDC1-205ENST00000447124 TRAV13-1A0A0B4J241 112 aa13.01□□□□□ -0.33
SDC1-205ENST00000447124 SYCNQ0VAF6 134 aa13.01□□□□□ -0.33
SDC1-205ENST00000447124 Q6ZUT4 128 aa13.01□□□□□ -0.33
SDC1-205ENST00000447124 CARD19Q96LW7 228 aa13.01□□□□□ -0.33
SDC1-205ENST00000447124 TIMM21Q9BVV7 248 aa13.01□□□□□ -0.33
SDC1-205ENST00000447124 D6R8Y8 96 aa13□□□□□ -0.33
SDC1-205ENST00000447124 ZNF561-AS1K7EIQ3 104 aa13□□□□□ -0.33
SDC1-205ENST00000447124 RPL39P62891 51 aaKnown RBP13□□□□□ -0.33
SDC1-205ENST00000447124 TNXBP22105 4242 aa12.99□□□□□ -0.33
SDC1-205ENST00000447124 IGLV4-69A0A075B6H9 119 aa12.99□□□□□ -0.33
SDC1-205ENST00000447124 NPYP01303 97 aa12.99□□□□□ -0.33
SDC1-205ENST00000447124 HBBP68871 147 aa12.99□□□□□ -0.33
SDC1-205ENST00000447124 C7orf33Q8WU49 177 aa12.99□□□□□ -0.33
SDC1-205ENST00000447124 COX7A2LO14548 114 aa12.98□□□□□ -0.33
SDC1-205ENST00000447124 SMAGPQ0VAQ4 97 aa12.98□□□□□ -0.33
SDC1-205ENST00000447124 C5orf38Q86SI9 138 aa12.98□□□□□ -0.33
SDC1-205ENST00000447124 SMIM2Q9BVW6 85 aa12.98□□□□□ -0.33
SDC1-205ENST00000447124 MALP21145 153 aa12.97□□□□□ -0.33
SDC1-205ENST00000447124 TMEM18Q96B42 140 aa12.97□□□□□ -0.33
SDC1-205ENST00000447124 OPRPNQ99935 248 aaPredicted RBP12.97□□□□□ -0.33
SDC1-205ENST00000447124 UBR4Q5T4S7 5183 aa12.96□□□□□ -0.33
SDC1-205ENST00000447124 F8W036 122 aa12.96□□□□□ -0.33
SDC1-205ENST00000447124 TCAPO15273 167 aa12.96□□□□□ -0.33
SDC1-205ENST00000447124 S100A8P05109 93 aa12.96□□□□□ -0.33
SDC1-205ENST00000447124 LINC00474Q9P2X8 69 aa12.95□□□□□ -0.34
SDC1-205ENST00000447124 PRR3P79522 188 aaKnown RBP12.94□□□□□ -0.34
SDC1-205ENST00000447124 PTTG1IPP53801 180 aa12.93□□□□□ -0.34
SDC1-205ENST00000447124 TMEM136Q6ZRR5 245 aa12.93□□□□□ -0.34
SDC1-205ENST00000447124 PPBPP02775 128 aa12.92□□□□□ -0.34
SDC1-205ENST00000447124 GAGE2BQ13066 116 aa12.92□□□□□ -0.34
SDC1-205ENST00000447124 C2orf48Q96LS8 159 aa12.92□□□□□ -0.34
SDC1-205ENST00000447124 CAMK2N2Q96S95 79 aa12.92□□□□□ -0.34
SDC1-205ENST00000447124 PKIGQ9Y2B9 76 aa12.92□□□□□ -0.34
SDC1-205ENST00000447124 LOC107984640A0A0U1RRK4 108 aa12.91□□□□□ -0.34
SDC1-205ENST00000447124 MRPS36P82909 103 aaKnown RBP12.91□□□□□ -0.34
SDC1-205ENST00000447124 SPANXA1Q9NS26 97 aa12.91□□□□□ -0.34
SDC1-205ENST00000447124 IGHV3OR16-9A0A0B4J2B5 98 aa12.9□□□□□ -0.34
SDC1-205ENST00000447124 A0A1W2PNN7 141 aa12.9□□□□□ -0.34
SDC1-205ENST00000447124 ATP5L2Q7Z4Y8 100 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms