RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 SLPIP03973 132 aa7.01□□□□□ -1.29
SF3A1-203ENST00000444440 ZNF25P17030 456 aaPredicted RBP7.01□□□□□ -1.29
SF3A1-203ENST00000444440 RPS10P46783 165 aaKnown RBP7.01□□□□□ -1.29
SF3A1-203ENST00000444440 SUMO2P61956 95 aaKnown RBP7.01□□□□□ -1.29
SF3A1-203ENST00000444440 KIR2DL4Q99706 377 aa7.01□□□□□ -1.29
SF3A1-203ENST00000444440 C20orf78Q9BR46 151 aa7.01□□□□□ -1.29
SF3A1-203ENST00000444440 TRBV24-1A0A075B6N3 115 aa7□□□□□ -1.29
SF3A1-203ENST00000444440 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7□□□□□ -1.29
SF3A1-203ENST00000444440 A0A1B0GXF2 115 aa7□□□□□ -1.29
SF3A1-203ENST00000444440 IGKV2-29A2NJV5 120 aaPredicted RBP7□□□□□ -1.29
SF3A1-203ENST00000444440 SMKR1H3BMG3 65 aa7□□□□□ -1.29
SF3A1-203ENST00000444440 TSHBP01222 138 aa7□□□□□ -1.29
SF3A1-203ENST00000444440 FGF6P10767 208 aa7□□□□□ -1.29
SF3A1-203ENST00000444440 NRACQ8N912 160 aa7□□□□□ -1.29
SF3A1-203ENST00000444440 TMEM242Q9NWH2 141 aa7□□□□□ -1.29
SF3A1-203ENST00000444440 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7□□□□□ -1.29
SF3A1-203ENST00000444440 ESDP10768 282 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 DGAT2L7PQ6IED9 249 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 COMMD7Q86VX2 200 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 C9orf163Q8N9P6 203 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 CLRN3Q8NCR9 226 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 TMEM18Q96B42 140 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 IMMP2LQ96T52 175 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 SEC11CQ9BY50 192 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 CTDSP1Q9GZU7 261 aa6.99□□□□□ -1.29
SF3A1-203ENST00000444440 IGKV3OR2-268A0A0C4DH90 116 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 C7orf77A4D0Y5 90 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 D6R8Y8 96 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 PHOX2AO14813 284 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 TNFRSF6BO95407 300 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 RPL32P62910 135 aaKnown RBP6.98□□□□□ -1.29
SF3A1-203ENST00000444440 CFAP161Q6P656 301 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 TMEM136Q6ZRR5 245 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 ORMDL3Q8N138 153 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 C15orf56Q8N910 161 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 OR5A1Q8NGJ0 315 aa6.98□□□□□ -1.29
SF3A1-203ENST00000444440 MRPL52Q86TS9 123 aaKnown RBP6.97□□□□□ -1.29
SF3A1-203ENST00000444440 hDV102S1A0JD36 115 aa6.96□□□□□ -1.3
SF3A1-203ENST00000444440 GAGE12HA6NDE8 117 aa6.96□□□□□ -1.3
SF3A1-203ENST00000444440 PLA2G1BP04054 148 aaKnown RBP6.96□□□□□ -1.3
SF3A1-203ENST00000444440 RAB5AP20339 215 aa6.96□□□□□ -1.3
SF3A1-203ENST00000444440 HNRNPA3P51991 378 aaKnown RBP6.96□□□□□ -1.3
SF3A1-203ENST00000444440 CNBPP62633 177 aaKnown RBP6.96□□□□□ -1.3
SF3A1-203ENST00000444440 SDIM1Q6ZPB5 146 aa6.96□□□□□ -1.3
SF3A1-203ENST00000444440 PRELID3AQ96N28 172 aa6.96□□□□□ -1.3
SF3A1-203ENST00000444440 AP5S1Q9NUS5 200 aa6.96□□□□□ -1.3
SF3A1-203ENST00000444440 LAMTOR2Q9Y2Q5 125 aa6.96□□□□□ -1.3
SF3A1-203ENST00000444440 TRAV9-1A0A075B6T8 112 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 CCL25O15444 150 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 NPYP01303 97 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 CHTF8P0CG12 524 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 ADCYAP1P18509 176 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 S100PP25815 95 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 SS18Q15532 418 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 ZNF664Q8N3J9 261 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 CHCHD10Q8WYQ3 142 aaPredicted RBP6.95□□□□□ -1.3
SF3A1-203ENST00000444440 SMIM2Q9BVW6 85 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 CDC42SE2Q9NRR3 84 aa6.95□□□□□ -1.3
SF3A1-203ENST00000444440 CSDC2Q9Y534 153 aaKnown RBP6.95□□□□□ -1.3
SF3A1-203ENST00000444440 FOXI1Q12951 378 aa6.94□□□□□ -1.3
SF3A1-203ENST00000444440 HIGD2BQ4VC39 106 aa6.94□□□□□ -1.3
SF3A1-203ENST00000444440 TIMM21Q9BVV7 248 aa6.94□□□□□ -1.3
SF3A1-203ENST00000444440 TNXBP22105 4242 aa6.94□□□□□ -1.3
SF3A1-203ENST00000444440 HMCN2Q8NDA2 5059 aa6.93□□□□□ -1.3
SF3A1-203ENST00000444440 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.93□□□□□ -1.3
SF3A1-203ENST00000444440 LINC00959A0A1B0GUT2 108 aa6.93□□□□□ -1.3
SF3A1-203ENST00000444440 PRSS47A8MTI9 375 aa6.93□□□□□ -1.3
SF3A1-203ENST00000444440 CIRBPQ14011 172 aaKnown RBP6.93□□□□□ -1.3
SF3A1-203ENST00000444440 C10orf91Q5T1B1 145 aa6.93□□□□□ -1.3
SF3A1-203ENST00000444440 MAP1LC3AQ9H492 121 aa6.93□□□□□ -1.3
SF3A1-203ENST00000444440 C1orf196B1AJZ1 125 aa6.92□□□□□ -1.3
SF3A1-203ENST00000444440 RHEBQ15382 184 aa6.92□□□□□ -1.3
SF3A1-203ENST00000444440 COX19Q49B96 90 aa6.92□□□□□ -1.3
SF3A1-203ENST00000444440 CARHSP1Q9Y2V2 147 aaKnown RBP6.92□□□□□ -1.3
SF3A1-203ENST00000444440 UBE2D4Q9Y2X8 147 aa6.92□□□□□ -1.3
SF3A1-203ENST00000444440 LOC389332A0A1B0GUA5 103 aa6.91□□□□□ -1.3
SF3A1-203ENST00000444440 KRTAP29-1A8MX34 341 aaPredicted RBP6.91□□□□□ -1.3
SF3A1-203ENST00000444440 XCL1P47992 114 aa6.91□□□□□ -1.3
SF3A1-203ENST00000444440 NDUFA5Q16718 116 aa6.91□□□□□ -1.3
SF3A1-203ENST00000444440 Q8N8P6 123 aa6.91□□□□□ -1.3
SF3A1-203ENST00000444440 LINC00526Q96FQ7 95 aa6.91□□□□□ -1.3
SF3A1-203ENST00000444440 RPS10P5Q9NQ39 176 aa6.91□□□□□ -1.3
SF3A1-203ENST00000444440 SPANXA1Q9NS26 97 aa6.91□□□□□ -1.3
SF3A1-203ENST00000444440 IGHV3-64A0A075B6Q5 118 aa6.9□□□□□ -1.3
SF3A1-203ENST00000444440 GVQW2A0A096LPI5 108 aaPredicted RBP6.9□□□□□ -1.3
SF3A1-203ENST00000444440 K7EMI3 77 aa6.9□□□□□ -1.3
SF3A1-203ENST00000444440 G0S2P27469 103 aa6.9□□□□□ -1.3
SF3A1-203ENST00000444440 RPL37AP61513 92 aaKnown RBP6.9□□□□□ -1.3
SF3A1-203ENST00000444440 RNASE13Q5GAN3 156 aaKnown RBP6.9□□□□□ -1.3
SF3A1-203ENST00000444440 CD164L2Q6UWJ8 174 aa6.9□□□□□ -1.3
SF3A1-203ENST00000444440 SPACA4Q8TDM5 124 aa6.9□□□□□ -1.3
SF3A1-203ENST00000444440 A0A087WYN8 130 aa6.89□□□□□ -1.31
SF3A1-203ENST00000444440 IGHV1-58A0A0C4DH39 117 aa6.89□□□□□ -1.31
SF3A1-203ENST00000444440 J3QL48 77 aa6.89□□□□□ -1.31
SF3A1-203ENST00000444440 RPL39P62891 51 aaKnown RBP6.89□□□□□ -1.31
SF3A1-203ENST00000444440 MRPS36P82909 103 aaKnown RBP6.89□□□□□ -1.31
SF3A1-203ENST00000444440 COX6A2Q02221 97 aa6.89□□□□□ -1.31
SF3A1-203ENST00000444440 PRSS3P2Q8NHM4 247 aa6.89□□□□□ -1.31
SF3A1-203ENST00000444440 FAM104AQ969W3 186 aa6.89□□□□□ -1.31
SF3A1-203ENST00000444440 GNB1LQ9BYB4 327 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms