RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 IGLV4-60A0A075B6I1 120 aa5□□□□□ -1.61
CD44-211ENST00000442151 TRBV6-5A0A0K0K1A5 114 aa5□□□□□ -1.61
CD44-211ENST00000442151 A0A1B0GVG6 124 aa5□□□□□ -1.61
CD44-211ENST00000442151 H3BS24 57 aa5□□□□□ -1.61
CD44-211ENST00000442151 TCAPO15273 167 aa5□□□□□ -1.61
CD44-211ENST00000442151 RIGQ13278 110 aa5□□□□□ -1.61
CD44-211ENST00000442151 FAM74A3Q4VXF1 159 aa5□□□□□ -1.61
CD44-211ENST00000442151 OR5A1Q8NGJ0 315 aa5□□□□□ -1.61
CD44-211ENST00000442151 TMEM18Q96B42 140 aa5□□□□□ -1.61
CD44-211ENST00000442151 MRAP2Q96G30 205 aa5□□□□□ -1.61
CD44-211ENST00000442151 RNASE7Q9H1E1 156 aaKnown RBP5□□□□□ -1.61
CD44-211ENST00000442151 MYCBP2O75592 4640 aa5□□□□□ -1.61
CD44-211ENST00000442151 TRBV20OR9-2A0A075B6H5 130 aa5□□□□□ -1.61
CD44-211ENST00000442151 A0A1B0GUT8 65 aa5□□□□□ -1.61
CD44-211ENST00000442151 SDHAF1A6NFY7 115 aa5□□□□□ -1.61
CD44-211ENST00000442151 MALP21145 153 aa5□□□□□ -1.61
CD44-211ENST00000442151 ISOC2Q96AB3 205 aa5□□□□□ -1.61
CD44-211ENST00000442151 OSTCQ9NRP0 149 aa5□□□□□ -1.61
CD44-211ENST00000442151 DNAH8Q96JB1 4490 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 FAT1Q14517 4588 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 IGHV1-58A0A0C4DH39 117 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 VCYO14598 125 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 PPP1R2P9O14990 202 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 FGF6P10767 208 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 CIRBPQ14011 172 aaKnown RBP4.99□□□□□ -1.61
CD44-211ENST00000442151 TSKUQ8WUA8 353 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 CHCHD10Q8WYQ3 142 aaPredicted RBP4.99□□□□□ -1.61
CD44-211ENST00000442151 TMEM191AQ9H0A3 160 aa4.99□□□□□ -1.61
CD44-211ENST00000442151 VPS13BQ7Z7G8 4022 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 IGKV3OR2-268A0A0C4DH90 116 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 ZNF727A8MUV8 499 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 K7EN84 100 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 FCER1GP30273 86 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 CEBPGP53567 150 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 LYPD6BQ8NI32 183 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 SMIM7Q9BQ49 75 aa4.98□□□□□ -1.61
CD44-211ENST00000442151 A0A1B0GW15 77 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 S100A8P05109 93 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 ALKAL2Q6UX46 152 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 GTSF1Q8WW33 167 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 KIR2DL4Q99706 377 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 A0A087WYN8 130 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 GVQW2A0A096LPI5 108 aaPredicted RBP4.97□□□□□ -1.61
CD44-211ENST00000442151 TRAV26-2A0A0B4J265 109 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 APOMO95445 188 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 TMEM241Q24JQ0 296 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 MRPL52Q86TS9 123 aaKnown RBP4.97□□□□□ -1.61
CD44-211ENST00000442151 RPL39LQ96EH5 51 aaKnown RBP4.97□□□□□ -1.61
CD44-211ENST00000442151 SMDT1Q9H4I9 107 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 PLAC8Q9NZF1 115 aa4.97□□□□□ -1.61
CD44-211ENST00000442151 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.96□□□□□ -1.62
CD44-211ENST00000442151 IGKV2-29A2NJV5 120 aaPredicted RBP4.96□□□□□ -1.62
CD44-211ENST00000442151 C7orf77A4D0Y5 90 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 HIGD1CA8MV81 97 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 C1orf196B1AJZ1 125 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 ESDP10768 282 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 KRTAP10-4P60372 401 aaPredicted RBP4.96□□□□□ -1.62
CD44-211ENST00000442151 PEA15Q15121 130 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 MAJINQ3KP22 176 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 CD164L2Q6UWJ8 174 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 ZNF664Q8N3J9 261 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 SPACA4Q8TDM5 124 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 NAT8BQ9UHF3 227 aa4.96□□□□□ -1.62
CD44-211ENST00000442151 CSDC2Q9Y534 153 aaKnown RBP4.96□□□□□ -1.62
CD44-211ENST00000442151 TRBV27A0A0K0K1C4 114 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 LINC00959A0A1B0GUT2 108 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 LINC00862A6NCI5 91 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 F8WDY8 70 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 RAB4AP20338 218 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 LINC01551Q86U37 167 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 PLA2G2DQ9UNK4 145 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 SRRM2Q9UQ35 2752 aaKnown RBP4.95□□□□□ -1.62
CD44-211ENST00000442151 F8W036 122 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 XCL1P47992 114 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 POLR2KP53803 58 aaKnown RBP4.95□□□□□ -1.62
CD44-211ENST00000442151 COX6A2Q02221 97 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 HIGD2BQ4VC39 106 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 C15orf56Q8N910 161 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 CDC42SE2Q9NRR3 84 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 TMEM242Q9NWH2 141 aa4.95□□□□□ -1.62
CD44-211ENST00000442151 TSHBP01222 138 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 SRP19P09132 144 aaKnown RBP4.94□□□□□ -1.62
CD44-211ENST00000442151 SYCNQ0VAF6 134 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 FOXI1Q12951 378 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 STPG4Q8N801 248 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 CARD19Q96LW7 228 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 C20orf78Q9BR46 151 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 TIMM21Q9BVV7 248 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 NAT8Q9UHE5 227 aa4.94□□□□□ -1.62
CD44-211ENST00000442151 LOC107984640A0A0U1RRK4 108 aa4.93□□□□□ -1.62
CD44-211ENST00000442151 COX7A2LO14548 114 aa4.93□□□□□ -1.62
CD44-211ENST00000442151 SLPIP03973 132 aa4.93□□□□□ -1.62
CD44-211ENST00000442151 SUMO2P61956 95 aaKnown RBP4.93□□□□□ -1.62
CD44-211ENST00000442151 REG3GQ6UW15 175 aa4.93□□□□□ -1.62
CD44-211ENST00000442151 IGLV4-69A0A075B6H9 119 aa4.93□□□□□ -1.62
CD44-211ENST00000442151 IGKV2-24A0A0C4DH68 120 aa4.93□□□□□ -1.62
CD44-211ENST00000442151 RPL32P62910 135 aaKnown RBP4.93□□□□□ -1.62
CD44-211ENST00000442151 NUP35Q8NFH5 326 aa4.93□□□□□ -1.62
CD44-211ENST00000442151 PPBPP02775 128 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 CHTF8P0CG12 524 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 153.3 ms