RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.93□□□□□ -1.62
VPS50-204ENST00000438395 IGKV2-29A2NJV5 120 aaPredicted RBP4.93□□□□□ -1.62
VPS50-204ENST00000438395 SDHAF1A6NFY7 115 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 H7C423 109 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 PHOX2AO14813 284 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 NDUFS6O75380 124 aaKnown RBP4.93□□□□□ -1.62
VPS50-204ENST00000438395 FGF6P10767 208 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 ZNF25P17030 456 aaPredicted RBP4.93□□□□□ -1.62
VPS50-204ENST00000438395 PMCHP20382 165 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 COX6A2Q02221 97 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 C15orf56Q8N910 161 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 GATD1Q8NB37 220 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 OR5A1Q8NGJ0 315 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 CNFNQ9BYD5 112 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 RNASE7Q9H1E1 156 aaKnown RBP4.93□□□□□ -1.62
VPS50-204ENST00000438395 PLAC8Q9NZF1 115 aa4.93□□□□□ -1.62
VPS50-204ENST00000438395 GVQW2A0A096LPI5 108 aaPredicted RBP4.92□□□□□ -1.62
VPS50-204ENST00000438395 A8MWL6 223 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 XCL1P47992 114 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 CEBPGP53567 150 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 Q6ZNX1 250 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 SLC51BQ86UW2 128 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 STPG4Q8N801 248 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 RPL39LQ96EH5 51 aaKnown RBP4.92□□□□□ -1.62
VPS50-204ENST00000438395 MRAP2Q96G30 205 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 FAT3Q8TDW7 4589 aa4.92□□□□□ -1.62
VPS50-204ENST00000438395 I3L3M4 83 aa4.91□□□□□ -1.62
VPS50-204ENST00000438395 GATCO43716 136 aaKnown RBP4.91□□□□□ -1.62
VPS50-204ENST00000438395 SMAGPQ0VAQ4 97 aa4.91□□□□□ -1.62
VPS50-204ENST00000438395 PRSS3P2Q8NHM4 247 aa4.91□□□□□ -1.62
VPS50-204ENST00000438395 LYPD6BQ8NI32 183 aa4.91□□□□□ -1.62
VPS50-204ENST00000438395 CARD19Q96LW7 228 aa4.91□□□□□ -1.62
VPS50-204ENST00000438395 ST20Q9HBF5 79 aa4.91□□□□□ -1.62
VPS50-204ENST00000438395 IGHV1-58A0A0C4DH39 117 aa4.9□□□□□ -1.63
VPS50-204ENST00000438395 CCL25O15444 150 aa4.9□□□□□ -1.63
VPS50-204ENST00000438395 MALP21145 153 aa4.9□□□□□ -1.63
VPS50-204ENST00000438395 FCER1GP30273 86 aa4.9□□□□□ -1.63
VPS50-204ENST00000438395 PRR3P79522 188 aaKnown RBP4.9□□□□□ -1.63
VPS50-204ENST00000438395 SS18Q15532 418 aa4.9□□□□□ -1.63
VPS50-204ENST00000438395 REG3GQ6UW15 175 aa4.9□□□□□ -1.63
VPS50-204ENST00000438395 OCC1Q8TAD7 63 aa4.9□□□□□ -1.63
VPS50-204ENST00000438395 A0A096LNI7 61 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 TMEM250H0YL14 139 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 K7EN84 100 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 MT1HL1P0DM35 61 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 BLOC1S1P78537 153 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 FOXI1Q12951 378 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 CT83Q5H943 113 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 TCTE3Q8IZS6 198 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 ISOC2Q96AB3 205 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 FAM210AQ96ND0 272 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 TMEM242Q9NWH2 141 aa4.89□□□□□ -1.63
VPS50-204ENST00000438395 TRBV6-5A0A0K0K1A5 114 aa4.88□□□□□ -1.63
VPS50-204ENST00000438395 LINC00959A0A1B0GUT2 108 aa4.88□□□□□ -1.63
VPS50-204ENST00000438395 A0A1B0GUT8 65 aa4.88□□□□□ -1.63
VPS50-204ENST00000438395 C7orf77A4D0Y5 90 aa4.88□□□□□ -1.63
VPS50-204ENST00000438395 FOXA3P55318 350 aaPredicted RBP4.88□□□□□ -1.63
VPS50-204ENST00000438395 SYCNQ0VAF6 134 aa4.88□□□□□ -1.63
VPS50-204ENST00000438395 SMIM7Q9BQ49 75 aa4.88□□□□□ -1.63
VPS50-204ENST00000438395 HIGD1CA8MV81 97 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 COX7A2LO14548 114 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 PPP1R17O96001 155 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 TSHBP01222 138 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 CAMPP49913 170 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 CD164L2Q6UWJ8 174 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 FAM231DQ6ZW35 169 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 LINC00526Q96FQ7 95 aa4.87□□□□□ -1.63
VPS50-204ENST00000438395 EIF5A2Q9GZV4 153 aaKnown RBP4.87□□□□□ -1.63
VPS50-204ENST00000438395 LOC107984640A0A0U1RRK4 108 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 C1orf196B1AJZ1 125 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 GAGE2BQ13066 116 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 RIGQ13278 110 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 SPINK6Q6UWN8 80 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 ALKAL2Q6UX46 152 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 Q6ZRP5 223 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 MRPL52Q86TS9 123 aaKnown RBP4.86□□□□□ -1.63
VPS50-204ENST00000438395 AKAP14Q86UN6 197 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 ZNF664Q8N3J9 261 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 TSKUQ8WUA8 353 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 TMEM18Q96B42 140 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 LINC01600Q96MT4 127 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 KIR2DL4Q99706 377 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 TMEM191AQ9H0A3 160 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 PKHD1L1Q86WI1 4243 aa4.86□□□□□ -1.63
VPS50-204ENST00000438395 TRAV13-1A0A0B4J241 112 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 TRBV27A0A0K0K1C4 114 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 FAM231BA6NCW3 169 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 ZNF727A8MUV8 499 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 VCYO14598 125 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 APOMO95445 188 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 MT-ND6P03923 174 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 ESDP10768 282 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 RPL18AQ02543 176 aaKnown RBP4.85□□□□□ -1.63
VPS50-204ENST00000438395 CAMK2N2Q96S95 79 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 CDC42SE2Q9NRR3 84 aa4.85□□□□□ -1.63
VPS50-204ENST00000438395 IGLV4-69A0A075B6H9 119 aa4.84□□□□□ -1.63
VPS50-204ENST00000438395 A0A0J9YXV3 536 aa4.84□□□□□ -1.63
VPS50-204ENST00000438395 PPP1R2P9O14990 202 aa4.84□□□□□ -1.63
VPS50-204ENST00000438395 SUMO2P61956 95 aaKnown RBP4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms