RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TNXBP22105 4242 aa9.09□□□□□ -0.95
SDC1-204ENST00000429035 TRBV6-5A0A0K0K1A5 114 aa9.08□□□□□ -0.96
SDC1-204ENST00000429035 C7orf77A4D0Y5 90 aa9.08□□□□□ -0.96
SDC1-204ENST00000429035 TMEM250H0YL14 139 aa9.08□□□□□ -0.96
SDC1-204ENST00000429035 ODF1Q14990 250 aa9.08□□□□□ -0.96
SDC1-204ENST00000429035 LINC00474Q9P2X8 69 aa9.08□□□□□ -0.96
SDC1-204ENST00000429035 A0A1B0GUT8 65 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 HIGD1CA8MV81 97 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 SMKR1H3BMG3 65 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 ESDP10768 282 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 FCER1GP30273 86 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 BLOC1S1P78537 153 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 SYCNQ0VAF6 134 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 CT83Q5H943 113 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 AMN1Q8IY45 258 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 SMIM7Q9BQ49 75 aa9.07□□□□□ -0.96
SDC1-204ENST00000429035 MALP21145 153 aa9.06□□□□□ -0.96
SDC1-204ENST00000429035 CAMPP49913 170 aa9.06□□□□□ -0.96
SDC1-204ENST00000429035 GAGE2BQ13066 116 aa9.06□□□□□ -0.96
SDC1-204ENST00000429035 RNASE13Q5GAN3 156 aaKnown RBP9.06□□□□□ -0.96
SDC1-204ENST00000429035 REG3GQ6UW15 175 aa9.05□□□□□ -0.96
SDC1-204ENST00000429035 CD164L2Q6UWJ8 174 aa9.05□□□□□ -0.96
SDC1-204ENST00000429035 ZNF664Q8N3J9 261 aa9.05□□□□□ -0.96
SDC1-204ENST00000429035 TSKUQ8WUA8 353 aa9.05□□□□□ -0.96
SDC1-204ENST00000429035 LINC01600Q96MT4 127 aa9.05□□□□□ -0.96
SDC1-204ENST00000429035 EIF5A2Q9GZV4 153 aaKnown RBP9.05□□□□□ -0.96
SDC1-204ENST00000429035 TMEM191AQ9H0A3 160 aa9.05□□□□□ -0.96
SDC1-204ENST00000429035 CDC42SE2Q9NRR3 84 aa9.05□□□□□ -0.96
SDC1-204ENST00000429035 hCG_2014768A0A024R1R8 64 aa9.04□□□□□ -0.96
SDC1-204ENST00000429035 RAB4AP20338 218 aa9.04□□□□□ -0.96
SDC1-204ENST00000429035 MRPL52Q86TS9 123 aaKnown RBP9.04□□□□□ -0.96
SDC1-204ENST00000429035 AKAP14Q86UN6 197 aa9.04□□□□□ -0.96
SDC1-204ENST00000429035 ISOC2Q96AB3 205 aa9.04□□□□□ -0.96
SDC1-204ENST00000429035 IGLV4-69A0A075B6H9 119 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 LOC107984640A0A0U1RRK4 108 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 ZNF727A8MUV8 499 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 COX7A2LO14548 114 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 PTTG1IPP53801 180 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 POLR2KP53803 58 aaKnown RBP9.03□□□□□ -0.96
SDC1-204ENST00000429035 SPINK6Q6UWN8 80 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 Q6ZRP5 223 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 LINC01551Q86U37 167 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 CAMK2N2Q96S95 79 aa9.03□□□□□ -0.96
SDC1-204ENST00000429035 TRAV13-1A0A0B4J241 112 aa9.02□□□□□ -0.97
SDC1-204ENST00000429035 A0A0J9YXV3 536 aa9.02□□□□□ -0.97
SDC1-204ENST00000429035 TRBV27A0A0K0K1C4 114 aa9.02□□□□□ -0.97
SDC1-204ENST00000429035 RPL18AQ02543 176 aaKnown RBP9.02□□□□□ -0.97
SDC1-204ENST00000429035 RIGQ13278 110 aa9.02□□□□□ -0.97
SDC1-204ENST00000429035 SMAGPQ0VAQ4 97 aa9.01□□□□□ -0.97
SDC1-204ENST00000429035 Q6ZUT4 128 aa9.01□□□□□ -0.97
SDC1-204ENST00000429035 KIR2DL4Q99706 377 aa9.01□□□□□ -0.97
SDC1-204ENST00000429035 OSTCQ9NRP0 149 aa9.01□□□□□ -0.97
SDC1-204ENST00000429035 LRP2P98164 4655 aa9□□□□□ -0.97
SDC1-204ENST00000429035 C1orf196B1AJZ1 125 aa9□□□□□ -0.97
SDC1-204ENST00000429035 VCYO14598 125 aa9□□□□□ -0.97
SDC1-204ENST00000429035 SUMO2P61956 95 aaKnown RBP9□□□□□ -0.97
SDC1-204ENST00000429035 SPAG11BQ08648 103 aa9□□□□□ -0.97
SDC1-204ENST00000429035 C5orf38Q86SI9 138 aa9□□□□□ -0.97
SDC1-204ENST00000429035 FAM210AQ96ND0 272 aa9□□□□□ -0.97
SDC1-204ENST00000429035 UBE2D4Q9Y2X8 147 aa9□□□□□ -0.97
SDC1-204ENST00000429035 NUP35Q8NFH5 326 aa8.99□□□□□ -0.97
SDC1-204ENST00000429035 APOMO95445 188 aa8.98□□□□□ -0.97
SDC1-204ENST00000429035 PPP1R17O96001 155 aa8.98□□□□□ -0.97
SDC1-204ENST00000429035 SRP19P09132 144 aaKnown RBP8.98□□□□□ -0.97
SDC1-204ENST00000429035 NRACQ8N912 160 aa8.98□□□□□ -0.97
SDC1-204ENST00000429035 TMEM18Q96B42 140 aa8.98□□□□□ -0.97
SDC1-204ENST00000429035 V9GYV3 84 aa8.98□□□□□ -0.97
SDC1-204ENST00000429035 A0A1W2PNN7 141 aa8.97□□□□□ -0.97
SDC1-204ENST00000429035 PPP1R2P9O14990 202 aa8.97□□□□□ -0.97
SDC1-204ENST00000429035 MT-ND6P03923 174 aa8.97□□□□□ -0.97
SDC1-204ENST00000429035 ADIRFQ15847 76 aa8.97□□□□□ -0.97
SDC1-204ENST00000429035 OPRPNQ99935 248 aaPredicted RBP8.97□□□□□ -0.97
SDC1-204ENST00000429035 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.96□□□□□ -0.98
SDC1-204ENST00000429035 MRPL51Q4U2R6 128 aaKnown RBP8.96□□□□□ -0.98
SDC1-204ENST00000429035 C9orf116Q5BN46 136 aaPredicted RBP8.96□□□□□ -0.98
SDC1-204ENST00000429035 NAT8BQ9UHF3 227 aa8.96□□□□□ -0.98
SDC1-204ENST00000429035 PHF5AQ7RTV0 110 aaKnown RBP8.95□□□□□ -0.98
SDC1-204ENST00000429035 ORAOV1Q8WV07 137 aa8.95□□□□□ -0.98
SDC1-204ENST00000429035 C2orf48Q96LS8 159 aa8.95□□□□□ -0.98
SDC1-204ENST00000429035 PSORS1C2Q9UIG4 136 aa8.95□□□□□ -0.98
SDC1-204ENST00000429035 CSDC2Q9Y534 153 aaKnown RBP8.95□□□□□ -0.98
SDC1-204ENST00000429035 KRTAP10-8P60410 259 aa8.94□□□□□ -0.98
SDC1-204ENST00000429035 RPL23P62829 140 aaKnown RBP8.94□□□□□ -0.98
SDC1-204ENST00000429035 RPL39P62891 51 aaKnown RBP8.94□□□□□ -0.98
SDC1-204ENST00000429035 SRSF9Q13242 221 aaKnown RBP eCLIP8.94□□□□□ -0.98
SDC1-204ENST00000429035 C1orf137Q5JT78 98 aa8.94□□□□□ -0.98
SDC1-204ENST00000429035 FAM104BQ5XKR9 115 aa8.94□□□□□ -0.98
SDC1-204ENST00000429035 CKS2P33552 79 aa8.93□□□□□ -0.98
SDC1-204ENST00000429035 TMEM241Q24JQ0 296 aa8.93□□□□□ -0.98
SDC1-204ENST00000429035 IFITM10A6NMD0 228 aa8.92□□□□□ -0.98
SDC1-204ENST00000429035 MRPL54Q6P161 138 aaKnown RBP8.92□□□□□ -0.98
SDC1-204ENST00000429035 TIMM21Q9BVV7 248 aa8.92□□□□□ -0.98
SDC1-204ENST00000429035 FAM74A3Q4VXF1 159 aa8.91□□□□□ -0.98
SDC1-204ENST00000429035 OR10D4PQ8NGN7 298 aa8.91□□□□□ -0.98
SDC1-204ENST00000429035 SMIM2Q9BVW6 85 aa8.91□□□□□ -0.98
SDC1-204ENST00000429035 LINC00862A6NCI5 91 aa8.9□□□□□ -0.98
SDC1-204ENST00000429035 D6R8Y8 96 aa8.9□□□□□ -0.98
SDC1-204ENST00000429035 NDUFA1O15239 70 aa8.9□□□□□ -0.98
SDC1-204ENST00000429035 TCAPO15273 167 aa8.9□□□□□ -0.98
SDC1-204ENST00000429035 TNFRSF6BO95407 300 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms