RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PRSS3P2Q8NHM4 247 aa7.3□□□□□ -1.24
SQSTM1-203ENST00000422245 EIF5A2Q9GZV4 153 aaKnown RBP7.3□□□□□ -1.24
SQSTM1-203ENST00000422245 OSTCQ9NRP0 149 aa7.3□□□□□ -1.24
SQSTM1-203ENST00000422245 LINC00474Q9P2X8 69 aa7.3□□□□□ -1.24
SQSTM1-203ENST00000422245 TRBV27A0A0K0K1C4 114 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 LINC00959A0A1B0GUT2 108 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 C7orf77A4D0Y5 90 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 ZNF727A8MUV8 499 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 PHOX2AO14813 284 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 CCL25O15444 150 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 GAS8-AS1O95177 125 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 MT1HL1P0DM35 61 aa7.29□□□□□ -1.24
SQSTM1-203ENST00000422245 UBR4Q5T4S7 5183 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 hCG_2014768A0A024R1R8 64 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 PPP1R17O96001 155 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 RAB4AP20338 218 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 POLR2KP53803 58 aaKnown RBP7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 SS18Q15532 418 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 AMN1Q8IY45 258 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 STPG4Q8N801 248 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 CARD19Q96LW7 228 aa7.28□□□□□ -1.24
SQSTM1-203ENST00000422245 A0A096LNI7 61 aa7.27□□□□□ -1.25
SQSTM1-203ENST00000422245 FCER1GP30273 86 aa7.27□□□□□ -1.25
SQSTM1-203ENST00000422245 PRR3P79522 188 aaKnown RBP7.27□□□□□ -1.25
SQSTM1-203ENST00000422245 SMAGPQ0VAQ4 97 aa7.27□□□□□ -1.25
SQSTM1-203ENST00000422245 RIGQ13278 110 aa7.27□□□□□ -1.25
SQSTM1-203ENST00000422245 CD164L2Q6UWJ8 174 aa7.27□□□□□ -1.25
SQSTM1-203ENST00000422245 CDC42SE2Q9NRR3 84 aa7.27□□□□□ -1.25
SQSTM1-203ENST00000422245 VCYO14598 125 aa7.26□□□□□ -1.25
SQSTM1-203ENST00000422245 SRP19P09132 144 aaKnown RBP7.26□□□□□ -1.25
SQSTM1-203ENST00000422245 ZNF664Q8N3J9 261 aa7.26□□□□□ -1.25
SQSTM1-203ENST00000422245 V9GYV3 84 aa7.26□□□□□ -1.25
SQSTM1-203ENST00000422245 ZNF561-AS1K7EIQ3 104 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 PPP1R2P9O14990 202 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 SUMO2P61956 95 aaKnown RBP7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 SYCNQ0VAF6 134 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 FAM74A3Q4VXF1 159 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 NUP35Q8NFH5 326 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 ISOC2Q96AB3 205 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 KIR2DL4Q99706 377 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 NAT8BQ9UHF3 227 aa7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 CSDC2Q9Y534 153 aaKnown RBP7.25□□□□□ -1.25
SQSTM1-203ENST00000422245 C1orf196B1AJZ1 125 aa7.24□□□□□ -1.25
SQSTM1-203ENST00000422245 SMKR1H3BMG3 65 aa7.24□□□□□ -1.25
SQSTM1-203ENST00000422245 CAMPP49913 170 aa7.24□□□□□ -1.25
SQSTM1-203ENST00000422245 NRACQ8N912 160 aa7.24□□□□□ -1.25
SQSTM1-203ENST00000422245 LINC00526Q96FQ7 95 aa7.24□□□□□ -1.25
SQSTM1-203ENST00000422245 COX7A2LO14548 114 aa7.23□□□□□ -1.25
SQSTM1-203ENST00000422245 MALP21145 153 aa7.23□□□□□ -1.25
SQSTM1-203ENST00000422245 TMEM241Q24JQ0 296 aa7.23□□□□□ -1.25
SQSTM1-203ENST00000422245 TMEM18Q96B42 140 aa7.23□□□□□ -1.25
SQSTM1-203ENST00000422245 UBE2D4Q9Y2X8 147 aa7.23□□□□□ -1.25
SQSTM1-203ENST00000422245 A0A1B0GW15 77 aa7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 TCAPO15273 167 aa7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 RPL23P62829 140 aaKnown RBP7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 ADIRFQ15847 76 aa7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 FAM104BQ5XKR9 115 aa7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 C20orf78Q9BR46 151 aa7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 TIMM21Q9BVV7 248 aa7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 NAT8Q9UHE5 227 aa7.22□□□□□ -1.25
SQSTM1-203ENST00000422245 IGLV4-69A0A075B6H9 119 aa7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 TRAV13-1A0A0B4J241 112 aa7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 LOC107984640A0A0U1RRK4 108 aa7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 LINC00862A6NCI5 91 aa7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 PTTG1IPP53801 180 aa7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 RPL32P62910 135 aaKnown RBP7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 MRPL51Q4U2R6 128 aaKnown RBP7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 Q6ZUT4 128 aa7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 LINC01600Q96MT4 127 aa7.21□□□□□ -1.26
SQSTM1-203ENST00000422245 SMIM27A0A1W2PRY6 76 aa7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 APOMO95445 188 aa7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 S100A8P05109 93 aa7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 RNASE13Q5GAN3 156 aaKnown RBP7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 SPINK6Q6UWN8 80 aa7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 Q6ZRP5 223 aa7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 C2orf48Q96LS8 159 aa7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 CAMK2N2Q96S95 79 aa7.2□□□□□ -1.26
SQSTM1-203ENST00000422245 TRBV24-1A0A075B6N3 115 aa7.19□□□□□ -1.26
SQSTM1-203ENST00000422245 CKS2P33552 79 aa7.19□□□□□ -1.26
SQSTM1-203ENST00000422245 GAGE2BQ13066 116 aa7.19□□□□□ -1.26
SQSTM1-203ENST00000422245 REG3GQ6UW15 175 aa7.19□□□□□ -1.26
SQSTM1-203ENST00000422245 C9JQL5 133 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 HBBP68871 147 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 SPAG11BQ08648 103 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 PEA15Q15121 130 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 OR10D4PQ8NGN7 298 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 SMIM2Q9BVW6 85 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 SMDT1Q9H4I9 107 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 SPANXA1Q9NS26 97 aa7.18□□□□□ -1.26
SQSTM1-203ENST00000422245 A0A0J9YXV3 536 aa7.17□□□□□ -1.26
SQSTM1-203ENST00000422245 F8W036 122 aa7.17□□□□□ -1.26
SQSTM1-203ENST00000422245 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.17□□□□□ -1.26
SQSTM1-203ENST00000422245 TNFRSF6BO95407 300 aa7.17□□□□□ -1.26
SQSTM1-203ENST00000422245 C5orf38Q86SI9 138 aa7.17□□□□□ -1.26
SQSTM1-203ENST00000422245 TNXBP22105 4242 aa7.16□□□□□ -1.26
SQSTM1-203ENST00000422245 D6R8Y8 96 aa7.16□□□□□ -1.26
SQSTM1-203ENST00000422245 F8WDY8 70 aa7.16□□□□□ -1.26
SQSTM1-203ENST00000422245 PPBPP02775 128 aa7.16□□□□□ -1.26
SQSTM1-203ENST00000422245 RPL39P62891 51 aaKnown RBP7.16□□□□□ -1.26
SQSTM1-203ENST00000422245 RPL18AQ02543 176 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms