RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 GAGE12JA6NER3 117 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 LINC00694P0DN24 101 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 DDTP30046 118 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 RPL39P62891 51 aaKnown RBP11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 GAGE1Q13065 139 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 GAGE4Q13068 117 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 GAGE5Q13069 117 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 GAGE13Q4V321 117 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 ATOH7Q8N100 152 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 MIEN1Q9BRT3 115 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 UQCR10Q9UDW1 63 aa11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 EPPK1P58107 5090 aaKnown RBP11.45□□□□□ -0.58
PDLIM1-201ENST00000329399 PRSS29PA6NIE9 313 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 HTN3P15516 51 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 MRPS36P82909 103 aaKnown RBP11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 MRPL52Q86TS9 123 aaKnown RBP11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 PMCHL2Q9BQD1 86 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 VCX2Q9H322 139 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 PRO1933Q9H354 126 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 Q9UF83 564 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 TRAV26-1A0A087WT03 109 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 PAX4O43316 350 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 CST9LQ9H4G1 147 aa11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 MRPL35Q9NZE8 188 aaKnown RBP11.44□□□□□ -0.58
PDLIM1-201ENST00000329399 DNAH10Q8IVF4 4471 aa11.43□□□□□ -0.58
PDLIM1-201ENST00000329399 TRBV25-1A0A075B6N4 114 aa11.43□□□□□ -0.58
PDLIM1-201ENST00000329399 IGLC3P0DOY3 106 aa11.43□□□□□ -0.58
PDLIM1-201ENST00000329399 H3BNG1 76 aa11.42□□□□□ -0.58
PDLIM1-201ENST00000329399 TMEM243Q9BU79 118 aa11.42□□□□□ -0.58
PDLIM1-201ENST00000329399 UBE2D4Q9Y2X8 147 aa11.42□□□□□ -0.58
PDLIM1-201ENST00000329399 IGLV4-3A0A075B6K6 122 aa11.41□□□□□ -0.58
PDLIM1-201ENST00000329399 IGHV3-38A0A0C4DH36 116 aa11.41□□□□□ -0.58
PDLIM1-201ENST00000329399 GYPEP15421 78 aa11.41□□□□□ -0.58
PDLIM1-201ENST00000329399 ZNF25P17030 456 aaPredicted RBP11.41□□□□□ -0.58
PDLIM1-201ENST00000329399 DGAT2L7PQ6IED9 249 aa11.41□□□□□ -0.58
PDLIM1-201ENST00000329399 ATP6V0E2Q8NHE4 81 aa11.41□□□□□ -0.58
PDLIM1-201ENST00000329399 AMELXQ99217 191 aa11.41□□□□□ -0.58
PDLIM1-201ENST00000329399 hDV102S1A0JD36 115 aa11.4□□□□□ -0.58
PDLIM1-201ENST00000329399 UBE2L6O14933 153 aa11.4□□□□□ -0.58
PDLIM1-201ENST00000329399 C2orf88Q9BSF0 95 aa11.4□□□□□ -0.58
PDLIM1-201ENST00000329399 TRBV6-8A0A0A6YYG3 113 aa11.39□□□□□ -0.59
PDLIM1-201ENST00000329399 MRPL23Q16540 153 aaKnown RBP11.39□□□□□ -0.59
PDLIM1-201ENST00000329399 NFE4Q86UQ8 179 aa11.39□□□□□ -0.59
PDLIM1-201ENST00000329399 TMEM101Q96IK0 257 aa11.39□□□□□ -0.59
PDLIM1-201ENST00000329399 DNAH2Q9P225 4427 aa11.39□□□□□ -0.59
PDLIM1-201ENST00000329399 DLEU1O43261 78 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 SLC25A34Q6PIV7 304 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 NTM-AS1Q6ZSK4 140 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 F5H768 121 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 COX8AP10176 69 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 SEC11AP67812 179 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 MAJINQ3KP22 176 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 ZC2HC1BQ5TFG8 222 aa11.38□□□□□ -0.59
PDLIM1-201ENST00000329399 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.37□□□□□ -0.59
PDLIM1-201ENST00000329399 LOC100131303A0A0U1RQF7 123 aa11.37□□□□□ -0.59
PDLIM1-201ENST00000329399 IGKV2-29A2NJV5 120 aaPredicted RBP11.37□□□□□ -0.59
PDLIM1-201ENST00000329399 TCTAP57738 103 aa11.37□□□□□ -0.59
PDLIM1-201ENST00000329399 HERVK_113P61574 105 aa11.37□□□□□ -0.59
PDLIM1-201ENST00000329399 C11orf86A6NJI1 115 aa11.36□□□□□ -0.59
PDLIM1-201ENST00000329399 FGF6P10767 208 aa11.36□□□□□ -0.59
PDLIM1-201ENST00000329399 AMMECR1LQ6DCA0 310 aa11.36□□□□□ -0.59
PDLIM1-201ENST00000329399 DEFB104AQ8WTQ1 72 aa11.36□□□□□ -0.59
PDLIM1-201ENST00000329399 VSIG2Q96IQ7 327 aa11.36□□□□□ -0.59
PDLIM1-201ENST00000329399 MRPS16Q9Y3D3 137 aaKnown RBP11.36□□□□□ -0.59
PDLIM1-201ENST00000329399 ICOSQ9Y6W8 199 aa11.36□□□□□ -0.59
PDLIM1-201ENST00000329399 SIVA1O15304 175 aa11.35□□□□□ -0.59
PDLIM1-201ENST00000329399 TIRAPP58753 221 aa11.35□□□□□ -0.59
PDLIM1-201ENST00000329399 STPG4Q8N801 248 aa11.35□□□□□ -0.59
PDLIM1-201ENST00000329399 OR5A1Q8NGJ0 315 aa11.35□□□□□ -0.59
PDLIM1-201ENST00000329399 IGLV4-69A0A075B6H9 119 aa11.34□□□□□ -0.59
PDLIM1-201ENST00000329399 FAM19A3Q7Z5A8 133 aa11.34□□□□□ -0.59
PDLIM1-201ENST00000329399 C14orf144Q96I85 54 aa11.34□□□□□ -0.59
PDLIM1-201ENST00000329399 A0A1B0GUV1 79 aa11.33□□□□□ -0.6
PDLIM1-201ENST00000329399 TINCRA0A1B0GVN0 87 aa11.33□□□□□ -0.6
PDLIM1-201ENST00000329399 LINC00587B1AMM8 73 aa11.33□□□□□ -0.6
PDLIM1-201ENST00000329399 HNRNPA3P51991 378 aaKnown RBP11.33□□□□□ -0.6
PDLIM1-201ENST00000329399 ANKRD39Q53RE8 183 aa11.33□□□□□ -0.6
PDLIM1-201ENST00000329399 E9PLD3 99 aa11.32□□□□□ -0.6
PDLIM1-201ENST00000329399 BOD1L2Q8IYS8 172 aa11.32□□□□□ -0.6
PDLIM1-201ENST00000329399 FAM104AQ969W3 186 aa11.32□□□□□ -0.6
PDLIM1-201ENST00000329399 CDC42SE2Q9NRR3 84 aa11.32□□□□□ -0.6
PDLIM1-201ENST00000329399 LBHQ53QV2 105 aaPredicted RBP11.32□□□□□ -0.6
PDLIM1-201ENST00000329399 CHCHD5Q9BSY4 110 aa11.32□□□□□ -0.6
PDLIM1-201ENST00000329399 CCL25O15444 150 aa11.31□□□□□ -0.6
PDLIM1-201ENST00000329399 OPRPNQ99935 248 aaPredicted RBP11.31□□□□□ -0.6
PDLIM1-201ENST00000329399 CHAC1Q9BUX1 264 aa11.31□□□□□ -0.6
PDLIM1-201ENST00000329399 A0A0J9YY99 117 aa11.3□□□□□ -0.6
PDLIM1-201ENST00000329399 NMUP48645 174 aa11.3□□□□□ -0.6
PDLIM1-201ENST00000329399 UBE2D1P51668 147 aa11.3□□□□□ -0.6
PDLIM1-201ENST00000329399 Q6ZUT4 128 aa11.3□□□□□ -0.6
PDLIM1-201ENST00000329399 FAT2Q9NYQ8 4349 aa11.3□□□□□ -0.6
PDLIM1-201ENST00000329399 DNAH17Q9UFH2 4485 aa11.29□□□□□ -0.6
PDLIM1-201ENST00000329399 HERVK_113P63121 156 aa11.29□□□□□ -0.6
PDLIM1-201ENST00000329399 TMEM170BQ5T4T1 132 aa11.29□□□□□ -0.6
PDLIM1-201ENST00000329399 LELP1Q5T871 98 aa11.29□□□□□ -0.6
PDLIM1-201ENST00000329399 H3BRM9 83 aa11.28□□□□□ -0.6
PDLIM1-201ENST00000329399 GEMIN7Q9H840 131 aaKnown RBP11.28□□□□□ -0.6
PDLIM1-201ENST00000329399 IGLV5-45A0A087WSX0 123 aa11.27□□□□□ -0.6
PDLIM1-201ENST00000329399 A0A0J9YXV3 536 aa11.27□□□□□ -0.6
PDLIM1-201ENST00000329399 M0R143 59 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms