RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 LMO4P61968 165 aa10.47□□□□□ -0.73
SDC1-201ENST00000254351 IGSF10Q6WRI0 2623 aa10.47□□□□□ -0.73
SDC1-201ENST00000254351 SNRPD3P62318 126 aaKnown RBP10.47□□□□□ -0.73
SDC1-201ENST00000254351 FAM218AQ96MZ4 157 aa10.47□□□□□ -0.73
SDC1-201ENST00000254351 A0A0J9YX75 114 aa10.46□□□□□ -0.73
SDC1-201ENST00000254351 hADV29S1A0JD25 119 aa10.46□□□□□ -0.74
SDC1-201ENST00000254351 LINC00308Q8TCZ7 52 aa10.46□□□□□ -0.74
SDC1-201ENST00000254351 SPANXDQ9BXN6 97 aa10.46□□□□□ -0.74
SDC1-201ENST00000254351 SPANXCQ9NY87 97 aa10.46□□□□□ -0.74
SDC1-201ENST00000254351 TRBV7-7A0A0K0K1E9 115 aa10.45□□□□□ -0.74
SDC1-201ENST00000254351 TIRAPP58753 221 aa10.45□□□□□ -0.74
SDC1-201ENST00000254351 CFHR3Q02985 330 aa10.45□□□□□ -0.74
SDC1-201ENST00000254351 CIRBPQ14011 172 aaKnown RBP10.45□□□□□ -0.74
SDC1-201ENST00000254351 SOSTDC1Q6X4U4 206 aa10.45□□□□□ -0.74
SDC1-201ENST00000254351 PRIMA1Q86XR5 153 aa10.45□□□□□ -0.74
SDC1-201ENST00000254351 BBC3Q96PG8 261 aaPredicted RBP10.45□□□□□ -0.74
SDC1-201ENST00000254351 CYSTM1Q9H1C7 97 aa10.45□□□□□ -0.74
SDC1-201ENST00000254351 A0A087WVE0 104 aa10.44□□□□□ -0.74
SDC1-201ENST00000254351 C3orf22Q8N5N4 141 aa10.44□□□□□ -0.74
SDC1-201ENST00000254351 IGHV3-53P01767 116 aa10.44□□□□□ -0.74
SDC1-201ENST00000254351 UBE2D4Q9Y2X8 147 aa10.44□□□□□ -0.74
SDC1-201ENST00000254351 CHD6Q8TD26 2715 aa10.44□□□□□ -0.74
SDC1-201ENST00000254351 TMEM126AQ9H061 195 aa10.43□□□□□ -0.74
SDC1-201ENST00000254351 C9orf129Q5T035 196 aaKnown RBP10.43□□□□□ -0.74
SDC1-201ENST00000254351 TOMM7Q9P0U1 55 aa10.43□□□□□ -0.74
SDC1-201ENST00000254351 USMG5Q96IX5 58 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 CHCHD7Q9BUK0 85 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 FAM240AA0A1B0GVK7 77 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 ATP5G1P05496 136 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 DEFB136Q30KP8 78 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 C19orf54Q5BKX5 351 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 C14orf132Q9NPU4 83 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 CFAP46Q8IYW2 2715 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 MXRA5Q9NR99 2828 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 TINCRA0A1B0GVN0 87 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 PRB1P04280 392 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 EPG5Q9HCE0 2579 aa10.42□□□□□ -0.74
SDC1-201ENST00000254351 COX7A2LO14548 114 aa10.41□□□□□ -0.74
SDC1-201ENST00000254351 CSDC2Q9Y534 153 aaKnown RBP10.41□□□□□ -0.74
SDC1-201ENST00000254351 FN1P02751 2386 aaKnown RBP10.41□□□□□ -0.74
SDC1-201ENST00000254351 DEFB131AP59861 70 aa10.41□□□□□ -0.74
SDC1-201ENST00000254351 KIR2DL5BQ8NHK3 375 aa10.41□□□□□ -0.74
SDC1-201ENST00000254351 FAM19A5Q7Z5A7 132 aaPredicted RBP10.4□□□□□ -0.74
SDC1-201ENST00000254351 ZNF843Q8N446 348 aa10.4□□□□□ -0.74
SDC1-201ENST00000254351 FLNCQ14315 2725 aa10.4□□□□□ -0.74
SDC1-201ENST00000254351 LINC00643Q86TS7 51 aa10.4□□□□□ -0.74
SDC1-201ENST00000254351 IGHV4-61A0A0C4DH41 118 aa10.39□□□□□ -0.75
SDC1-201ENST00000254351 SLPIP03973 132 aa10.39□□□□□ -0.75
SDC1-201ENST00000254351 KHDC1LQ5JSQ8 128 aa10.39□□□□□ -0.75
SDC1-201ENST00000254351 ZFYVE26Q68DK2 2539 aa10.39□□□□□ -0.75
SDC1-201ENST00000254351 UQCRQO14949 82 aa10.38□□□□□ -0.75
SDC1-201ENST00000254351 C11orf68Q9H3H3 251 aaKnown RBP10.38□□□□□ -0.75
SDC1-201ENST00000254351 KLK9Q2XQG4 91 aa10.38□□□□□ -0.75
SDC1-201ENST00000254351 PYGO1Q9Y3Y4 419 aa10.38□□□□□ -0.75
SDC1-201ENST00000254351 PIMREGQ9BSJ6 248 aa10.38□□□□□ -0.75
SDC1-201ENST00000254351 NF1P21359 2839 aa10.37□□□□□ -0.75
SDC1-201ENST00000254351 DEFB121Q5J5C9 76 aa10.37□□□□□ -0.75
SDC1-201ENST00000254351 FAM208BQ5VWN6 2430 aa10.37□□□□□ -0.75
SDC1-201ENST00000254351 A0A1B0GX51 115 aa10.37□□□□□ -0.75
SDC1-201ENST00000254351 MAPK1IP1LQ8NDC0 245 aa10.37□□□□□ -0.75
SDC1-201ENST00000254351 WFDC9Q8NEX5 89 aa10.37□□□□□ -0.75
SDC1-201ENST00000254351 DSCR8Q96T75 97 aa10.37□□□□□ -0.75
SDC1-201ENST00000254351 NDUFA1O15239 70 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 DNAL4O96015 105 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 NAV2Q8IVL1 2488 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 LINC00242Q5T6M2 205 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 UBE2E2Q96LR5 201 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 NBEAL2Q6ZNJ1 2754 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 K7EQG2 157 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 RNASE1P07998 156 aaKnown RBP10.36□□□□□ -0.75
SDC1-201ENST00000254351 HIST1H4AP62805 103 aaKnown RBP10.36□□□□□ -0.75
SDC1-201ENST00000254351 NRGNQ92686 78 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 DNAJC30Q96LL9 226 aa10.36□□□□□ -0.75
SDC1-201ENST00000254351 A0A087WYN8 130 aa10.35□□□□□ -0.75
SDC1-201ENST00000254351 IGHV4-59P01825 116 aa10.35□□□□□ -0.75
SDC1-201ENST00000254351 PEMTQ9UBM1 199 aa10.35□□□□□ -0.75
SDC1-201ENST00000254351 NCR3O14931 201 aa10.35□□□□□ -0.75
SDC1-201ENST00000254351 LINC00526Q96FQ7 95 aa10.35□□□□□ -0.75
SDC1-201ENST00000254351 C22orf24Q9Y442 160 aa10.35□□□□□ -0.75
SDC1-201ENST00000254351 MYO18BQ8IUG5 2567 aa10.35□□□□□ -0.75
SDC1-201ENST00000254351 AVPP01185 164 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 ACYP1P07311 99 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 C18orf65Q6ZTR6 163 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 OR13C6PQ8NH95 151 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 SPANXA1Q9NS26 97 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 AKAP9Q99996 3911 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 PFN2P35080 140 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 XCL2Q9UBD3 114 aa10.34□□□□□ -0.75
SDC1-201ENST00000254351 COX7CP15954 63 aa10.33□□□□□ -0.76
SDC1-201ENST00000254351 MALP21145 153 aa10.33□□□□□ -0.76
SDC1-201ENST00000254351 RNF152Q8N8N0 203 aa10.33□□□□□ -0.76
SDC1-201ENST00000254351 C19orf84I3L1E1 186 aa10.33□□□□□ -0.76
SDC1-201ENST00000254351 LINC01600Q96MT4 127 aa10.33□□□□□ -0.76
SDC1-201ENST00000254351 IGLV1-40P01703 118 aa10.33□□□□□ -0.76
SDC1-201ENST00000254351 LRRK2Q5S007 2527 aa10.32□□□□□ -0.76
SDC1-201ENST00000254351 RBMY1BA6NDE4 496 aaKnown RBP10.32□□□□□ -0.76
SDC1-201ENST00000254351 RBMY1EA6NEQ0 496 aaKnown RBP10.32□□□□□ -0.76
SDC1-201ENST00000254351 SMIM1B2RUZ4 78 aa10.32□□□□□ -0.76
SDC1-201ENST00000254351 J3KT08 172 aa10.32□□□□□ -0.76
SDC1-201ENST00000254351 RBMY1DP0C7P1 496 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms