RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TM2D3Q9BRN9 247 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 MED14OSP0DP75 135 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 HTN3P15516 51 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 PLEKHB2Q96CS7 222 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 TRGV4A0A0C4DH28 118 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 TSHBP01222 138 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 RPL24P83731 157 aaKnown RBP6.22□□□□□ -1.41
VPS4B-201ENST00000238497 CST9LQ9H4G1 147 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 HUWE1Q7Z6Z7 4374 aaKnown RBP6.21□□□□□ -1.41
VPS4B-201ENST00000238497 TRAV8-3A0A0A6YYJ7 113 aa6.21□□□□□ -1.41
VPS4B-201ENST00000238497 TRAV2A0A0B4J234 112 aa6.21□□□□□ -1.41
VPS4B-201ENST00000238497 A8MWV9 139 aa6.21□□□□□ -1.41
VPS4B-201ENST00000238497 CFAP126Q5VTH2 177 aa6.21□□□□□ -1.41
VPS4B-201ENST00000238497 C1orf158Q8N1D5 194 aa6.21□□□□□ -1.42
VPS4B-201ENST00000238497 GEMIN7Q9H840 131 aaKnown RBP6.21□□□□□ -1.42
VPS4B-201ENST00000238497 SPCS1Q9Y6A9 102 aa6.21□□□□□ -1.42
VPS4B-201ENST00000238497 LOC100131303A0A0U1RQF7 123 aa6.2□□□□□ -1.42
VPS4B-201ENST00000238497 MYMXA0A1B0GTQ4 84 aa6.2□□□□□ -1.42
VPS4B-201ENST00000238497 C3orf84H3BNL1 204 aa6.2□□□□□ -1.42
VPS4B-201ENST00000238497 APOC4P55056 127 aa6.2□□□□□ -1.42
VPS4B-201ENST00000238497 SEC11AP67812 179 aa6.2□□□□□ -1.42
VPS4B-201ENST00000238497 FABP2P12104 132 aa6.2□□□□□ -1.42
VPS4B-201ENST00000238497 MRPL52Q86TS9 123 aaKnown RBP6.2□□□□□ -1.42
VPS4B-201ENST00000238497 C20orf203Q8NBC4 194 aa6.2□□□□□ -1.42
VPS4B-201ENST00000238497 KMT2CQ8NEZ4 4911 aaKnown RBP6.2□□□□□ -1.42
VPS4B-201ENST00000238497 TRBV27A0A0K0K1C4 114 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 SPINK8P0C7L1 97 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 CASC10Q5T4H9 136 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 ODF3Q96PU9 254 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 SCGB1C2P0DMR2 95 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 LINC00467Q9BRT7 94 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 IGIPA6NJ69 53 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 TMEM262E9PQX1 116 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 Q1RN00 199 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 CEND1Q8N111 149 aa6.19□□□□□ -1.42
VPS4B-201ENST00000238497 POM121L12Q8N7R1 296 aa6.18□□□□□ -1.42
VPS4B-201ENST00000238497 TOMM7Q9P0U1 55 aa6.18□□□□□ -1.42
VPS4B-201ENST00000238497 UBE2L6O14933 153 aa6.18□□□□□ -1.42
VPS4B-201ENST00000238497 RPL36AP83881 106 aaKnown RBP6.18□□□□□ -1.42
VPS4B-201ENST00000238497 Q6ZUT4 128 aa6.18□□□□□ -1.42
VPS4B-201ENST00000238497 GTF2H5Q6ZYL4 71 aa6.18□□□□□ -1.42
VPS4B-201ENST00000238497 DAND5Q8N907 189 aa6.18□□□□□ -1.42
VPS4B-201ENST00000238497 RPL36ALQ969Q0 106 aaKnown RBP6.18□□□□□ -1.42
VPS4B-201ENST00000238497 J3QQQ9 107 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 NXPH4O95158 308 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 EDA2RQ9HAV5 297 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 IGLV4-3A0A075B6K6 122 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 TRAV12-1A0A0B4J245 112 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 A0A0J9YY99 117 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 C9orf118A6NHY6 69 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 TSPEAR-AS2P59090 65 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 CLPSL2Q6UWE3 100 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 SLC25A29Q8N8R3 303 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 TMEM141Q96I45 108 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 A0A0J9YWU9 116 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 LINC01549A6NIU2 74 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 CMC4P56277 68 aaPredicted RBP6.17□□□□□ -1.42
VPS4B-201ENST00000238497 GAGE6Q13070 117 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 OVOL2Q9BRP0 275 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 CHCHD5Q9BSY4 110 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 C11orf68Q9H3H3 251 aaKnown RBP6.17□□□□□ -1.42
VPS4B-201ENST00000238497 PGPEP1Q9NXJ5 209 aa6.17□□□□□ -1.42
VPS4B-201ENST00000238497 IGLV4-69A0A075B6H9 119 aa6.16□□□□□ -1.42
VPS4B-201ENST00000238497 H3BRM9 83 aa6.16□□□□□ -1.42
VPS4B-201ENST00000238497 PSMB2P49721 201 aa6.16□□□□□ -1.42
VPS4B-201ENST00000238497 E9PLD3 99 aa6.16□□□□□ -1.42
VPS4B-201ENST00000238497 H3BMG7 143 aa6.16□□□□□ -1.42
VPS4B-201ENST00000238497 C12orf74Q32Q52 190 aa6.16□□□□□ -1.42
VPS4B-201ENST00000238497 C11orf72Q8NBR9 251 aa6.16□□□□□ -1.42
VPS4B-201ENST00000238497 TIMM21Q9BVV7 248 aa6.15□□□□□ -1.42
VPS4B-201ENST00000238497 LINC01546A6NGU7 62 aa6.15□□□□□ -1.42
VPS4B-201ENST00000238497 RHODO00212 210 aa6.15□□□□□ -1.42
VPS4B-201ENST00000238497 LINC00694P0DN24 101 aa6.15□□□□□ -1.42
VPS4B-201ENST00000238497 IL17DQ8TAD2 202 aa6.15□□□□□ -1.42
VPS4B-201ENST00000238497 TIMM17AQ99595 171 aa6.15□□□□□ -1.42
VPS4B-201ENST00000238497 SIVA1O15304 175 aa6.15□□□□□ -1.43
VPS4B-201ENST00000238497 RHOHQ15669 191 aa6.15□□□□□ -1.43
VPS4B-201ENST00000238497 PAPPA-AS1Q5QFB9 102 aa6.15□□□□□ -1.43
VPS4B-201ENST00000238497 TRBV7-3A0A075B6L6 115 aa6.14□□□□□ -1.43
VPS4B-201ENST00000238497 TRBV6-5A0A0K0K1A5 114 aa6.14□□□□□ -1.43
VPS4B-201ENST00000238497 A0A1W2PPM0 123 aa6.14□□□□□ -1.43
VPS4B-201ENST00000238497 TMEM263Q8WUH6 116 aaKnown RBP6.14□□□□□ -1.43
VPS4B-201ENST00000238497 ZNF22P17026 224 aaPredicted RBP6.14□□□□□ -1.43
VPS4B-201ENST00000238497 KIR2DL5BQ8NHK3 375 aa6.13□□□□□ -1.43
VPS4B-201ENST00000238497 CDKN2A-AS1Q9UH64 79 aa6.13□□□□□ -1.43
VPS4B-201ENST00000238497 K7EQD1 137 aa6.13□□□□□ -1.43
VPS4B-201ENST00000238497 C1QTNF4Q9BXJ3 329 aa6.13□□□□□ -1.43
VPS4B-201ENST00000238497 IGHV3-30-3P0DP02 117 aa6.12□□□□□ -1.43
VPS4B-201ENST00000238497 MEIG1Q5JSS6 88 aa6.12□□□□□ -1.43
VPS4B-201ENST00000238497 OR5A1Q8NGJ0 315 aa6.12□□□□□ -1.43
VPS4B-201ENST00000238497 RNF183Q96D59 192 aa6.12□□□□□ -1.43
VPS4B-201ENST00000238497 NDUFA12Q9UI09 145 aa6.12□□□□□ -1.43
VPS4B-201ENST00000238497 IGLL5B9A064 214 aa6.12□□□□□ -1.43
VPS4B-201ENST00000238497 OCIAD2Q56VL3 154 aa6.12□□□□□ -1.43
VPS4B-201ENST00000238497 RS1O15537 224 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 GIG44P09565 113 aaPredicted RBP6.11□□□□□ -1.43
VPS4B-201ENST00000238497 SH2D6Q7Z4S9 175 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 MUSTN1Q8IVN3 82 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 CHCHD7Q9BUK0 85 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 HIGD1BQ9P298 99 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms