RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 HOMER1Q86YM7 354 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 KCNH3Q9ULD8 1083 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.16■■□□□ 1.31e-6■■■■□ 24.9
SYNGAP1-227ENST00000638142 UBN2Q6ZU65 1347 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 RANBP6O60518 1105 aaKnown RBP23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 UQCRFS1P1P0C7P4 283 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 FCHSD1Q86WN1 690 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 CNNM3Q8NE01 707 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 CLIC6Q96NY7 704 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 SENP2Q9HC62 589 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 FAM217BQ9NTX9 383 aaPredicted RBP23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 PDE8BO95263 885 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 TMEM67Q5HYA8 995 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 NLRP10Q86W26 655 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 DNAJC10Q8IXB1 793 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 DPF2Q92785 391 aa23.15■■□□□ 1.3
SYNGAP1-227ENST00000638142 TCRBV5S4A2TA0A5A2 114 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 STARD3NLO95772 234 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 H2AFXP16104 143 aaPredicted RBP23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 TERF2Q15554 542 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 LONRF3Q496Y0 759 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 WASF1Q92558 559 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 STRBPQ96SI9 672 aaKnown RBP23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 HOOK1Q9UJC3 728 aaKnown RBP23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 TOGARAM1Q9Y4F4 1720 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 SYNE4Q8N205 404 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 KRI1Q8N9T8 703 aaKnown RBP23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 AIDAQ96BJ3 306 aa23.14■■□□□ 1.29
SYNGAP1-227ENST00000638142 TOP1P11387 765 aaKnown RBP23.13■■□□□ 1.29
SYNGAP1-227ENST00000638142 SSRP1Q08945 709 aaKnown RBP23.13■■□□□ 1.29
SYNGAP1-227ENST00000638142 PCDHA5Q9Y5H7 936 aa23.13■■□□□ 1.29
SYNGAP1-227ENST00000638142 LRP6O75581 1613 aa23.13■■□□□ 1.29
SYNGAP1-227ENST00000638142 ERCC6LQ2NKX8 1250 aa23.13■■□□□ 1.29
SYNGAP1-227ENST00000638142 WWC3Q9ULE0 1092 aa23.13■■□□□ 1.29
SYNGAP1-227ENST00000638142 SLC12A7Q9Y666 1083 aa23.13■■□□□ 1.29
SYNGAP1-227ENST00000638142 NID2Q14112 1375 aa23.12■■□□□ 1.29
SYNGAP1-227ENST00000638142 FMNL1O95466 1100 aaPredicted RBP23.12■■□□□ 1.29
SYNGAP1-227ENST00000638142 NOSTRINQ8IVI9 506 aa23.12■■□□□ 1.29
SYNGAP1-227ENST00000638142 PHKA1P46020 1223 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 FOXP4Q8IVH2 680 aaPredicted RBP23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 SRRTQ9BXP5 876 aaKnown RBP23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 SLC26A6Q9BXS9 759 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 CNNM2Q9H8M5 875 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 FANCLQ9NW38 375 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 MYH3P11055 1940 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 MYO5AQ9Y4I1 1855 aaKnown RBP23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 PATL2C9JE40 543 aaKnown RBP23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 IFNAR1P17181 557 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 GPTP24298 496 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 SYTL4Q96C24 671 aaPredicted RBP23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 DNAI1Q9UI46 699 aa23.11■■□□□ 1.29
SYNGAP1-227ENST00000638142 IRS4O14654 1257 aaPredicted RBP23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 ZSCAN12O43309 604 aa23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 FAM193AP78312 1265 aa23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 HLFQ16534 295 aa23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 TRIM65Q6PJ69 517 aa23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 IFIT3O14879 490 aaKnown RBP23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 ARHGAP6O43182 974 aa23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 MDM2Q00987 491 aaPredicted RBP23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 SAFBQ15424 915 aaKnown RBP eCLIP23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 MYL10Q9BUA6 226 aa23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 ZNF446Q9NWS9 450 aa23.1■■□□□ 1.29
SYNGAP1-227ENST00000638142 PUM3Q15397 648 aaKnown RBP23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 IFNL3Q8IZI9 196 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 NAPBQ9H115 298 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 ZSWIM5Q9P217 1185 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 ASAP1Q9ULH1 1129 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 MMP1P03956 469 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 BMS1Q14692 1282 aaKnown RBP23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 REXO1L1PQ8IX06 675 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 LPIN2Q92539 896 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 UTP14AQ9BVJ6 771 aaKnown RBP23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 KRT23Q9C075 422 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 EPB41L4AQ9HCS5 686 aaPredicted RBP23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 TAOK2Q9UL54 1235 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 TIAM2Q8IVF5 1701 aa23.09■■□□□ 1.29
SYNGAP1-227ENST00000638142 NPHP1O15259 732 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 BRINP3Q76B58 766 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 STK11IPQ8N1F8 1099 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 NOL10Q9BSC4 688 aaKnown RBP23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 ANKRD36CQ5JPF3 1778 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 TMEM232C9JQI7 657 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 PDE8AO60658 829 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 BMP6P22004 513 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 NT5DC1Q5TFE4 455 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 LRRN4CLQ8ND94 238 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 DACH1Q9UI36 760 aa23.08■■□□□ 1.29
SYNGAP1-227ENST00000638142 POSTNQ15063 836 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 RILPL1Q5EBL4 403 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 AKNAD1Q5T1N1 836 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 TMEM139Q8IV31 216 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 TRIM22Q8IYM9 498 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 PIGBQ92521 554 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 FOXP1Q9H334 677 aaPredicted RBP23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 INTS13Q9NVM9 706 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 MROH5Q6ZUA9 1318 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 CHD4Q14839 1912 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 GOLGA6L9A6NEM1 432 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 FGFR2P21802 821 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 PTPREP23469 700 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms