RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PTPDC1A2A3K4 754 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ZPR1O75312 459 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 GABPB1Q06547 395 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 COPS6Q7L5N1 327 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ARHGEF25Q86VW2 580 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PLA2G4DQ86XP0 818 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ZNF274Q96GC6 653 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 C8orf76Q96K31 380 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 NMRK2Q9NPI5 230 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 CEP126Q9P2H0 1117 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PYCARDQ9ULZ3 195 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 A0A1W2PQ27 194 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 A0A1W2PQ64 194 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 A0A1W2PQD8 194 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 GOLGA6L9A6NEM1 432 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SPDYE4A6NLX3 237 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SASH1O94885 1247 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 IFIT1P09914 478 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SKILP12757 684 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 TCIRG1Q13488 830 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SAFBQ15424 915 aaKnown RBP eCLIP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 TTC39AQ5SRH9 613 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 TEX35Q5T0J7 233 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 HOMER1Q86YM7 354 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ZNF397Q8NF99 534 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SLC52A2Q9HAB3 445 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PAG1Q9NWQ8 432 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 CWC25Q9NXE8 425 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 RCOR1Q9UKL0 485 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PNPLA7Q6ZV29 1317 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PCDH11XQ9BZA7 1347 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PCDH11YQ9BZA8 1340 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 MYH1P12882 1939 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 MYH6P13533 1939 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PRAMEF22A3QJZ6 481 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 UNCXA6NJT0 531 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 RNF113AO15541 343 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 YEATS4O95619 227 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SLC3A2P08195 630 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ADD1P35611 737 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ZC3H6P61129 1189 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 CEBPZQ03701 1054 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 TFCP2Q12800 502 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 WASHC4Q2M389 1173 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PROSER3Q2NL68 480 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 UBE3BQ7Z3V4 1068 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PROM2Q8N271 834 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 MNS1Q8NEH6 495 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 PLBD2Q8NHP8 589 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 WASF1Q92558 559 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 JARID2Q92833 1246 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SRRTQ9BXP5 876 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 TAOK3Q9H2K8 898 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SALL1Q9NSC2 1324 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 ZSCAN12O43309 604 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 ST5P78524 1137 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 CBX1P83916 185 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 DMTNQ08495 405 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 TOB2Q14106 344 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 FILIP1Q7Z7B0 1213 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 P2RX7Q99572 595 aaKnown RBP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 FOCADQ5VW36 1801 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 CACNA1SQ13698 1873 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 NHSQ6T4R5 1651 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 CCDC69A6NI79 296 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 GOLIM4O00461 696 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 SLU7O95391 586 aaKnown RBP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 YBX3P16989 372 aaKnown RBP eCLIP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 SNW1Q13573 536 aaKnown RBP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 CCDC93Q567U6 631 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 KRT222Q8N1A0 295 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 C17orf53Q8N3J3 647 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 L3MBTL3Q96JM7 780 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 TCEANC2Q96MN5 208 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 TEX13AQ9BXU3 409 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-214ENST00000637038 AXIN2Q9Y2T1 843 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 ZNF609O15014 1411 aa4.59□□□□□ -1.67
SCN1A-214ENST00000637038 COL24A1Q17RW2 1714 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 CTIFO43310 598 aaKnown RBP4.59□□□□□ -1.68
SCN1A-214ENST00000637038 NR1I2O75469 434 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 FOSBP53539 338 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC57Q2TAC2 916 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 BICDL1Q6ZP65 573 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 DDX46Q7L014 1031 aaKnown RBP4.59□□□□□ -1.68
SCN1A-214ENST00000637038 SAMD7Q7Z3H4 446 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 NCOA7Q8NI08 942 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 SMARCC2Q8TAQ2 1214 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.59□□□□□ -1.68
SCN1A-214ENST00000637038 TBC1D2BQ9UPU7 963 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 TAF1P21675 1872 aa4.59□□□□□ -1.68
SCN1A-214ENST00000637038 MYH14Q7Z406 1995 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 GOLGA8BA8MQT2 603 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 JAK2O60674 1132 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 IGKV5-2P06315 115 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ADALQ6DHV7 355 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 AOPEPQ8N6M6 819 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 NSUN7Q8NE18 718 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ANKRD7Q92527 254 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 DDX17Q92841 729 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 SYTL4Q96C24 671 aaPredicted RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms