RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TMEM57Q8N5G2 664 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 ZNF384Q8TF68 577 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 IDI2Q9BXS1 227 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 AKAP2Q9Y2D5 859 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 RBBP6Q7Z6E9 1792 aaKnown RBP15.42■□□□□ 0.06
UPF1-203ENST00000594504 ENTPD3O75355 529 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 MS4A1P11836 297 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 MECOMQ03112 1051 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 MTX1Q13505 466 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 SLC4A8Q2Y0W8 1093 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 GPAT2Q6NUI2 795 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 ERICH6Q7L0X2 663 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 NBPF11Q86T75 865 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 HMG20BQ9P0W2 317 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.42■□□□□ 0.06
UPF1-203ENST00000594504 ZHX2Q9Y6X8 837 aa15.42■□□□□ 0.06
UPF1-203ENST00000594504 ATRNL1Q5VV63 1379 aa15.41■□□□□ 0.06
UPF1-203ENST00000594504 ZBTB22O15209 634 aa15.41■□□□□ 0.06
UPF1-203ENST00000594504 CYP2C8P10632 490 aa15.41■□□□□ 0.06
UPF1-203ENST00000594504 RLBP1P12271 317 aa15.41■□□□□ 0.06
UPF1-203ENST00000594504 PSMC4P43686 418 aa15.41■□□□□ 0.06
UPF1-203ENST00000594504 CCDC84Q86UT8 332 aaPredicted RBP15.41■□□□□ 0.06
UPF1-203ENST00000594504 FAM163AQ96GL9 167 aaPredicted RBP15.41■□□□□ 0.06
UPF1-203ENST00000594504 ADGRA2Q96PE1 1338 aa15.41■□□□□ 0.06
UPF1-203ENST00000594504 DOCK2Q92608 1830 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 FAM196BA6NMK8 535 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 GNAI2P04899 355 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 PTPRAP18433 802 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 RHBDL3P58872 404 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 MVPQ14764 893 aaKnown RBP15.4■□□□□ 0.06
UPF1-203ENST00000594504 SPTY2D1Q68D10 685 aaPredicted RBP15.4■□□□□ 0.06
UPF1-203ENST00000594504 ITPRIPQ8IWB1 547 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 SCYL3Q8IZE3 742 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 TRIM47Q96LD4 638 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 MROH7-TTC4A0A0A0MT08 1334 aa15.4■□□□□ 0.06
UPF1-203ENST00000594504 RFX7Q2KHR2 1363 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 GPR75-ASB3A0A0A6YYF3 556 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 CXCL11O14625 94 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 FMNL1O95466 1100 aaPredicted RBP15.39■□□□□ 0.05
UPF1-203ENST00000594504 OSBPP22059 807 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 MAP3K10Q02779 954 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 G3BP1Q13283 466 aaKnown RBP eCLIP15.39■□□□□ 0.053e-6■■□□□ 12.4
UPF1-203ENST00000594504 MTFR1Q15390 333 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 GORABQ5T7V8 394 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 GADL1Q6ZQY3 521 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 SLF2Q8IX21 1173 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 SPATA5Q8NB90 893 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 AFG3L2Q9Y4W6 797 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 PDE4DIPQ5VU43 2346 aa15.39■□□□□ 0.05
UPF1-203ENST00000594504 PDS5AQ29RF7 1337 aaKnown RBP15.39■□□□□ 0.05
UPF1-203ENST00000594504 PANK1Q8TE04 598 aa15.38■□□□□ 0.05
UPF1-203ENST00000594504 NSUN4Q96CB9 384 aaKnown RBP15.38■□□□□ 0.05
UPF1-203ENST00000594504 PICK1Q9NRD5 415 aa15.38■□□□□ 0.05
UPF1-203ENST00000594504 RAI14Q9P0K7 980 aa15.38■□□□□ 0.05
UPF1-203ENST00000594504 SRRDQ9UH36 339 aa15.38■□□□□ 0.05
UPF1-203ENST00000594504 A0A0G2JLL6 359 aaPredicted RBP15.37■□□□□ 0.05
UPF1-203ENST00000594504 GNRH1P01148 92 aa15.37■□□□□ 0.05
UPF1-203ENST00000594504 BCRP11274 1271 aa15.37■□□□□ 0.05
UPF1-203ENST00000594504 ARID4AP29374 1257 aaPredicted RBP15.37■□□□□ 0.05
UPF1-203ENST00000594504 MCAMP43121 646 aa15.37■□□□□ 0.05
UPF1-203ENST00000594504 PRRT2Q7Z6L0 340 aaPredicted RBP15.37■□□□□ 0.05
UPF1-203ENST00000594504 SNRKQ9NRH2 765 aa15.37■□□□□ 0.05
UPF1-203ENST00000594504 GABRQQ9UN88 632 aa15.37■□□□□ 0.05
UPF1-203ENST00000594504 PHIPQ8WWQ0 1821 aa15.36■□□□□ 0.05
UPF1-203ENST00000594504 TRIM75PA6NK02 468 aa15.36■□□□□ 0.05
UPF1-203ENST00000594504 ZBTB7BO15156 539 aaPredicted RBP15.36■□□□□ 0.05
UPF1-203ENST00000594504 CTNND1O60716 968 aaKnown RBP15.36■□□□□ 0.05
UPF1-203ENST00000594504 PRMT2P55345 433 aa15.36■□□□□ 0.05
UPF1-203ENST00000594504 RRP1BQ14684 758 aaKnown RBP15.36■□□□□ 0.05
UPF1-203ENST00000594504 FASTKD5Q7L8L6 764 aaKnown RBP15.36■□□□□ 0.05
UPF1-203ENST00000594504 RAET1EQ8TD07 263 aa15.36■□□□□ 0.05
UPF1-203ENST00000594504 PARK7Q99497 189 aaKnown RBP15.36■□□□□ 0.05
UPF1-203ENST00000594504 C1orf115Q9H7X2 142 aa15.36■□□□□ 0.05
UPF1-203ENST00000594504 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.36■□□□□ 0.05
UPF1-203ENST00000594504 MYPNQ86TC9 1320 aa15.36■□□□□ 0.05
UPF1-203ENST00000594504 MGAMO43451 1857 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 LDHCP07864 332 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 HOXD10P28358 340 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 ATP8B2P98198 1209 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 PRKCZQ05513 592 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 PDE3AQ14432 1141 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 LRP2BPQ9P2M1 347 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 DOCK1Q14185 1865 aa15.35■□□□□ 0.05
UPF1-203ENST00000594504 KIAA0100Q14667 2235 aaKnown RBP15.35■□□□□ 0.05
UPF1-203ENST00000594504 TBC1D12O60347 775 aa15.34■□□□□ 0.05
UPF1-203ENST00000594504 GRK4P32298 578 aa15.34■□□□□ 0.05
UPF1-203ENST00000594504 GSTO1P78417 241 aa15.34■□□□□ 0.05
UPF1-203ENST00000594504 POLA2Q14181 598 aa15.34■□□□□ 0.05
UPF1-203ENST00000594504 HABP4Q5JVS0 413 aaKnown RBP15.34■□□□□ 0.05
UPF1-203ENST00000594504 SH3RF3Q8TEJ3 882 aaPredicted RBP15.34■□□□□ 0.05
UPF1-203ENST00000594504 DBNDD2Q9BQY9 259 aa15.34■□□□□ 0.05
UPF1-203ENST00000594504 OSBPL5Q9H0X9 879 aaPredicted RBP15.34■□□□□ 0.05
UPF1-203ENST00000594504 DDX19BQ9UMR2 479 aa15.34■□□□□ 0.05
UPF1-203ENST00000594504 PTPRFP10586 1907 aa15.34■□□□□ 0.05
UPF1-203ENST00000594504 UQCRFS1P1P0C7P4 283 aa15.33■□□□□ 0.04
UPF1-203ENST00000594504 FCGRTP55899 365 aa15.33■□□□□ 0.04
UPF1-203ENST00000594504 TNNI3KQ59H18 835 aa15.33■□□□□ 0.04
UPF1-203ENST00000594504 TTC39AQ5SRH9 613 aa15.33■□□□□ 0.04
UPF1-203ENST00000594504 TREML2Q5T2D2 321 aa15.33■□□□□ 0.04
UPF1-203ENST00000594504 TEX11Q8IYF3 940 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms