RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZSCAN29Q8IWY8 852 aaPredicted RBP19.83■□□□□ 0.76
CLN3-229ENST00000567963 DOCK2Q92608 1830 aa19.83■□□□□ 0.76
CLN3-229ENST00000567963 POTEFA5A3E0 1075 aa19.82■□□□□ 0.76
CLN3-229ENST00000567963 DDTLA6NHG4 134 aaPredicted RBP19.82■□□□□ 0.76
CLN3-229ENST00000567963 LACTBP83111 547 aaPredicted RBP19.82■□□□□ 0.76
CLN3-229ENST00000567963 MOGSQ13724 837 aa19.82■□□□□ 0.76
CLN3-229ENST00000567963 POLA2Q14181 598 aa19.82■□□□□ 0.76
CLN3-229ENST00000567963 TBC1D9Q6ZT07 1266 aa19.82■□□□□ 0.76
CLN3-229ENST00000567963 PDHXO00330 501 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 MCAMP43121 646 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 RHBDL3P58872 404 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 ATP8B2P98198 1209 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 PICALMQ13492 652 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 KIF22Q14807 665 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 C17orf99Q6UX52 265 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 SSH3Q8TE77 659 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 NSUN4Q96CB9 384 aaKnown RBP19.81■□□□□ 0.76
CLN3-229ENST00000567963 ARHGAP39Q9C0H5 1083 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 PTCH2Q9Y6C5 1203 aa19.81■□□□□ 0.76
CLN3-229ENST00000567963 CXCL11O14625 94 aa19.8■□□□□ 0.76
CLN3-229ENST00000567963 LDHCP07864 332 aa19.8■□□□□ 0.76
CLN3-229ENST00000567963 SCYL3Q8IZE3 742 aa19.8■□□□□ 0.76
CLN3-229ENST00000567963 NPM3O75607 178 aaKnown RBP19.79■□□□□ 0.76
CLN3-229ENST00000567963 GNRH1P01148 92 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 UQCRFS1P1P0C7P4 283 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 PTPRAP18433 802 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 GSTO1P78417 241 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 PRPF38BQ5VTL8 546 aaKnown RBP19.79■□□□□ 0.76
CLN3-229ENST00000567963 DIEXFQ68CQ4 756 aaKnown RBP19.79■□□□□ 0.76
CLN3-229ENST00000567963 NBPF11Q86T75 865 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 ZNF333Q96JL9 665 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 GPR108Q9NPR9 543 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 RAI14Q9P0K7 980 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 ZHX2Q9Y6X8 837 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 RBBP6Q7Z6E9 1792 aaKnown RBP19.79■□□□□ 0.76
CLN3-229ENST00000567963 MAP4K4O95819 1239 aaPredicted RBP19.79■□□□□ 0.76
CLN3-229ENST00000567963 SLURP2P0DP57 97 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 SLC9C1Q4G0N8 1177 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 FTSJ3Q8IY81 847 aaKnown RBP19.79■□□□□ 0.76
CLN3-229ENST00000567963 PICK1Q9NRD5 415 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 CPA4Q9UI42 421 aa19.79■□□□□ 0.76
CLN3-229ENST00000567963 ZSWIM8A7E2V4 1837 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 ZBTB7BO15156 539 aaPredicted RBP19.78■□□□□ 0.76
CLN3-229ENST00000567963 CTNND1O60716 968 aaKnown RBP19.78■□□□□ 0.76
CLN3-229ENST00000567963 SLC34A2O95436 690 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 TNNI3KQ59H18 835 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 GPAT2Q6NUI2 795 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 C1orf115Q9H7X2 142 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 LRP2BPQ9P2M1 347 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 AFG3L2Q9Y4W6 797 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 FPGT-TNNI3KV9GXZ4 949 aa19.78■□□□□ 0.76
CLN3-229ENST00000567963 ADGRA2Q96PE1 1338 aa19.77■□□□□ 0.76
CLN3-229ENST00000567963 A0A0G2JLL6 359 aaPredicted RBP19.77■□□□□ 0.76
CLN3-229ENST00000567963 TBC1D12O60347 775 aa19.77■□□□□ 0.76
CLN3-229ENST00000567963 SURF6O75683 361 aaKnown RBP19.77■□□□□ 0.76
CLN3-229ENST00000567963 RLBP1P12271 317 aa19.77■□□□□ 0.76
CLN3-229ENST00000567963 PRRT2Q7Z6L0 340 aaPredicted RBP19.77■□□□□ 0.76
CLN3-229ENST00000567963 ITPRIPQ8IWB1 547 aa19.77■□□□□ 0.76
CLN3-229ENST00000567963 KIAA0100Q14667 2235 aaKnown RBP19.76■□□□□ 0.75
CLN3-229ENST00000567963 EN2P19622 333 aaPredicted RBP19.76■□□□□ 0.75
CLN3-229ENST00000567963 CTGFP29279 349 aa19.76■□□□□ 0.75
CLN3-229ENST00000567963 OS9Q13438 667 aaPredicted RBP19.76■□□□□ 0.75
CLN3-229ENST00000567963 CCDC158Q5M9N0 1113 aa19.76■□□□□ 0.75
CLN3-229ENST00000567963 FASTKD5Q7L8L6 764 aaKnown RBP19.76■□□□□ 0.75
CLN3-229ENST00000567963 DBNDD2Q9BQY9 259 aa19.76■□□□□ 0.75
CLN3-229ENST00000567963 TMEM106CQ9BVX2 250 aa19.76■□□□□ 0.75
CLN3-229ENST00000567963 PSMC4P43686 418 aa19.75■□□□□ 0.75
CLN3-229ENST00000567963 PRMT2P55345 433 aa19.75■□□□□ 0.75
CLN3-229ENST00000567963 TTC39AQ5SRH9 613 aa19.75■□□□□ 0.75
CLN3-229ENST00000567963 PARK7Q99497 189 aaKnown RBP19.75■□□□□ 0.75
CLN3-229ENST00000567963 NOP58Q9Y2X3 529 aaKnown RBP19.75■□□□□ 0.75
CLN3-229ENST00000567963 DOCK1Q14185 1865 aa19.74■□□□□ 0.75
CLN3-229ENST00000567963 ECM2O94769 699 aaPredicted RBP19.74■□□□□ 0.75
CLN3-229ENST00000567963 CYP2C8P10632 490 aa19.74■□□□□ 0.75
CLN3-229ENST00000567963 OSBPL5Q9H0X9 879 aaPredicted RBP19.74■□□□□ 0.75
CLN3-229ENST00000567963 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.74■□□□□ 0.75
CLN3-229ENST00000567963 SNRKQ9NRH2 765 aa19.74■□□□□ 0.75
CLN3-229ENST00000567963 PHIPQ8WWQ0 1821 aa19.74■□□□□ 0.75
CLN3-229ENST00000567963 SH3TC2Q8TF17 1288 aa19.73■□□□□ 0.75
CLN3-229ENST00000567963 ZNF512BQ96KM6 892 aaPredicted RBP19.73■□□□□ 0.75
CLN3-229ENST00000567963 TRIM47Q96LD4 638 aa19.73■□□□□ 0.75
CLN3-229ENST00000567963 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.73■□□□□ 0.75
CLN3-229ENST00000567963 COL2A1P02458 1487 aaPredicted RBP19.73■□□□□ 0.75
CLN3-229ENST00000567963 CYP2E1P05181 493 aaPredicted RBP19.73■□□□□ 0.75
CLN3-229ENST00000567963 BCRP11274 1271 aa19.73■□□□□ 0.75
CLN3-229ENST00000567963 HOXD10P28358 340 aa19.73■□□□□ 0.75
CLN3-229ENST00000567963 NAA16Q6N069 864 aaPredicted RBP19.73■□□□□ 0.75
CLN3-229ENST00000567963 TEX11Q8IYF3 940 aa19.73■□□□□ 0.75
CLN3-229ENST00000567963 SRRDQ9UH36 339 aa19.73■□□□□ 0.75
CLN3-229ENST00000567963 SLC45A1Q9Y2W3 748 aa19.73■□□□□ 0.75
CLN3-229ENST00000567963 PTPRFP10586 1907 aa19.72■□□□□ 0.75
CLN3-229ENST00000567963 ZBED9Q6R2W3 1325 aa19.72■□□□□ 0.75
CLN3-229ENST00000567963 TRIM75PA6NK02 468 aa19.72■□□□□ 0.75
CLN3-229ENST00000567963 FAM196BA6NMK8 535 aa19.72■□□□□ 0.75
CLN3-229ENST00000567963 FMNL1O95466 1100 aaPredicted RBP19.72■□□□□ 0.75
CLN3-229ENST00000567963 OSBPP22059 807 aa19.72■□□□□ 0.75
CLN3-229ENST00000567963 SLC4A8Q2Y0W8 1093 aa19.72■□□□□ 0.75
CLN3-229ENST00000567963 GADL1Q6ZQY3 521 aa19.72■□□□□ 0.75
CLN3-229ENST00000567963 SH3RF3Q8TEJ3 882 aaPredicted RBP19.72■□□□□ 0.75
CLN3-229ENST00000567963 NOL10Q9BSC4 688 aaKnown RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms