RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 NOL10Q9BSC4 688 aaKnown RBP16.71■□□□□ 0.27
SHMT2-219ENST00000555563 ELP3Q9H9T3 547 aa16.71■□□□□ 0.27
SHMT2-219ENST00000555563 SUPT16HQ9Y5B9 1047 aaKnown RBP16.71■□□□□ 0.27
SHMT2-219ENST00000555563 COL2A1P02458 1487 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-219ENST00000555563 GOLIM4O00461 696 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 NPM3O75607 178 aaKnown RBP16.7■□□□□ 0.26
SHMT2-219ENST00000555563 BAG3O95817 575 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 MAP4K4O95819 1239 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-219ENST00000555563 ZBTB48P10074 688 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-219ENST00000555563 ATP5JP18859 108 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 CYP7A1P22680 504 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 GJA5P36382 358 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 MAP3K9P80192 1104 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 TTF1Q15361 905 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-219ENST00000555563 ZSCAN29Q8IWY8 852 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-219ENST00000555563 TEX11Q8IYF3 940 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 MAGEB6Q8N7X4 407 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 OPTNQ96CV9 577 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 EDC3Q96F86 508 aaKnown RBP16.7■□□□□ 0.26
SHMT2-219ENST00000555563 ZNF341Q9BYN7 854 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 BOLA2Q9H3K6 86 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 CSADQ9Y600 493 aa16.7■□□□□ 0.26
SHMT2-219ENST00000555563 DDTLA6NHG4 134 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-219ENST00000555563 MAP3K12Q12852 859 aa16.69■□□□□ 0.26
SHMT2-219ENST00000555563 REM2Q8IYK8 340 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-219ENST00000555563 SAGE1Q9NXZ1 904 aa16.69■□□□□ 0.26
SHMT2-219ENST00000555563 SNCAIPQ9Y6H5 919 aa16.69■□□□□ 0.26
SHMT2-219ENST00000555563 PLCG2P16885 1265 aa16.68■□□□□ 0.26
SHMT2-219ENST00000555563 PPP4CP60510 307 aa16.68■□□□□ 0.26
SHMT2-219ENST00000555563 DYNLL1P63167 89 aaKnown RBP16.68■□□□□ 0.26
SHMT2-219ENST00000555563 EXOC6Q8TAG9 804 aa16.68■□□□□ 0.26
SHMT2-219ENST00000555563 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
SHMT2-219ENST00000555563 HAUS7Q99871 368 aa16.68■□□□□ 0.26
SHMT2-219ENST00000555563 OSBPL5Q9H0X9 879 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-219ENST00000555563 PAG1Q9NWQ8 432 aa16.68■□□□□ 0.26
SHMT2-219ENST00000555563 RNF186Q9NXI6 227 aa16.68■□□□□ 0.26
SHMT2-219ENST00000555563 CCDC85CA6NKD9 419 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 PDE6AP16499 860 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 INPP5BP32019 993 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 SREBF2Q12772 1141 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 HDAC1Q13547 482 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-219ENST00000555563 AAMPQ13685 434 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 TSHZ3Q63HK5 1081 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 MIGA1Q8NAN2 632 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 ZKSCAN4Q969J2 545 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-219ENST00000555563 ECHDC1Q9NTX5 307 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 ZNF112Q9UJU3 913 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 SIPA1L1O43166 1804 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 FLT1P17948 1338 aa16.67■□□□□ 0.26
SHMT2-219ENST00000555563 MANSC4A6NHS7 340 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-219ENST00000555563 SPDYE5A6NIY4 337 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 TRPA1O75762 1119 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 SLURP2P0DP57 97 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 TM4SF4P48230 202 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 DDX60LQ5H9U9 1706 aaKnown RBP16.66■□□□□ 0.26
SHMT2-219ENST00000555563 TMED8Q6PL24 325 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-219ENST00000555563 MAPKAPK5Q8IW41 473 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 TGFBRAP1Q8WUH2 860 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 OTUD5Q96G74 571 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 MYH7P12883 1935 aa16.66■□□□□ 0.26
SHMT2-219ENST00000555563 DOCK1Q14185 1865 aa16.65■□□□□ 0.26
SHMT2-219ENST00000555563 SLC9C2Q5TAH2 1124 aa16.65■□□□□ 0.26
SHMT2-219ENST00000555563 GPATCH3Q96I76 525 aa16.65■□□□□ 0.26
SHMT2-219ENST00000555563 ZNF532Q9HCE3 1301 aa16.65■□□□□ 0.26
SHMT2-219ENST00000555563 TCRBV5S4A2TA0A5A2 114 aa16.64■□□□□ 0.25
SHMT2-219ENST00000555563 FAM196BA6NMK8 535 aa16.64■□□□□ 0.25
SHMT2-219ENST00000555563 PHF20L1A8MW92 1017 aa16.64■□□□□ 0.25
SHMT2-219ENST00000555563 NOL9Q5SY16 702 aaKnown RBP16.64■□□□□ 0.25
SHMT2-219ENST00000555563 ERO1BQ86YB8 467 aa16.64■□□□□ 0.25
SHMT2-219ENST00000555563 CERS3Q8IU89 383 aa16.64■□□□□ 0.25
SHMT2-219ENST00000555563 OTUD7AQ8TE49 926 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-219ENST00000555563 RIOK1Q9BRS2 568 aaKnown RBP16.64■□□□□ 0.25
SHMT2-219ENST00000555563 NAV1Q8NEY1 1877 aa16.64■□□□□ 0.25
SHMT2-219ENST00000555563 IGF2BP3O00425 579 aaKnown RBP eCLIP16.63■□□□□ 0.25
SHMT2-219ENST00000555563 RGS19P49795 217 aa16.63■□□□□ 0.25
SHMT2-219ENST00000555563 MAP3K10Q02779 954 aa16.63■□□□□ 0.25
SHMT2-219ENST00000555563 MLLT1Q03111 559 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-219ENST00000555563 IFNL1Q8IU54 200 aa16.63■□□□□ 0.25
SHMT2-219ENST00000555563 GCC1Q96CN9 775 aa16.63■□□□□ 0.25
SHMT2-219ENST00000555563 MAGEB6P1A0A0J9YX57 407 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 TBC1D12O60347 775 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 ADD2P35612 726 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 INHBEP58166 350 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 PPIL2Q13356 520 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 SLFNL1Q499Z3 407 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 ANKRD45Q5TZF3 282 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 MS4A4AQ96JQ5 239 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.62■□□□□ 0.256e-7■■□□□ 14.2
SHMT2-219ENST00000555563 SAP30BPQ9UHR5 308 aaKnown RBP16.62■□□□□ 0.25
SHMT2-219ENST00000555563 TTC41PQ6P2S7 1318 aa16.62■□□□□ 0.25
SHMT2-219ENST00000555563 MYH1P12882 1939 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 TESPA1A2RU30 521 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-219ENST00000555563 IRF6O14896 467 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 TBC1D8O95759 1140 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 CHGBP05060 677 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 USP5P45974 858 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 GTF2A2P52657 109 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 IRX6P78412 446 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-219ENST00000555563 PPATQ06203 517 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 SCYL3Q8IZE3 742 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms