RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 DSCC1Q9BVC3 393 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 ZNF70Q9UC06 446 aaPredicted RBP12.86□□□□□ -0.35
TDP1-211ENST00000555178 SNX14Q9Y5W7 946 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 CNTNAP1P78357 1384 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 FLT1P17948 1338 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 TCP10L2B9ZVM9 353 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 CYP21A2P08686 494 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 CTDSPL2Q05D32 466 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 KIF4BQ2VIQ3 1234 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 ADCK5Q3MIX3 580 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 STOX1Q6ZVD7 989 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 RPAP1Q9BWH6 1393 aaPredicted RBP12.85□□□□□ -0.35
TDP1-211ENST00000555178 BAG3O95817 575 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 CPA1P15085 419 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 PLCD1P51178 756 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 CTR9Q6PD62 1173 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 MTMR14Q8NCE2 650 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 HDAC9Q9UKV0 1011 aa12.85□□□□□ -0.35
TDP1-211ENST00000555178 USP17L12C9JPN9 530 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 USP17L21D6R901 530 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 EIF5BO60841 1220 aaKnown RBP12.84□□□□□ -0.35
TDP1-211ENST00000555178 CD2BP2O95400 341 aaKnown RBP12.84□□□□□ -0.35
TDP1-211ENST00000555178 USP5P45974 858 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 SPDYE2Q495Y8 402 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 PRAMEF18Q5VWM3 479 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 SLF2Q8IX21 1173 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 CRNKL1Q9BZJ0 848 aaKnown RBP12.84□□□□□ -0.35
TDP1-211ENST00000555178 MYH8P13535 1937 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 DDTLA6NHG4 134 aaPredicted RBP12.84□□□□□ -0.35
TDP1-211ENST00000555178 MCCP23508 829 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 DPY19L2Q6NUT2 758 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 TBC1D10CQ8IV04 446 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 DYNLL2Q96FJ2 89 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 L3MBTL3Q96JM7 780 aaPredicted RBP12.84□□□□□ -0.35
TDP1-211ENST00000555178 UPF3BQ9BZI7 483 aaKnown RBP12.84□□□□□ -0.35
TDP1-211ENST00000555178 VEZTQ9HBM0 779 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 NMRK2Q9NPI5 230 aa12.84□□□□□ -0.35
TDP1-211ENST00000555178 U3KPZ7 1027 aaPredicted RBP12.84□□□□□ -0.35
TDP1-211ENST00000555178 FAM196BA6NMK8 535 aa12.83□□□□□ -0.36
TDP1-211ENST00000555178 MINDY4BA8MYZ0 360 aa12.83□□□□□ -0.36
TDP1-211ENST00000555178 H7C1D1 291 aa12.83□□□□□ -0.36
TDP1-211ENST00000555178 ANP32AP39687 249 aaKnown RBP12.83□□□□□ -0.36
TDP1-211ENST00000555178 TDO2P48775 406 aa12.83□□□□□ -0.36
TDP1-211ENST00000555178 NOL10Q9BSC4 688 aaKnown RBP12.83□□□□□ -0.36
TDP1-211ENST00000555178 RRAGCQ9HB90 399 aa12.83□□□□□ -0.36
TDP1-211ENST00000555178 MCM9Q9NXL9 1143 aa12.83□□□□□ -0.36
TDP1-211ENST00000555178 HACL1Q9UJ83 578 aa12.83□□□□□ -0.36
TDP1-211ENST00000555178 EPB41L2O43491 1005 aaKnown RBP12.82□□□□□ -0.36
TDP1-211ENST00000555178 ALX1Q15699 326 aa12.82□□□□□ -0.36
TDP1-211ENST00000555178 ANGEL2Q5VTE6 544 aaKnown RBP12.82□□□□□ -0.36
TDP1-211ENST00000555178 SLC44A5Q8NCS7 719 aa12.82□□□□□ -0.36
TDP1-211ENST00000555178 TMEM39BQ9GZU3 492 aa12.82□□□□□ -0.36
TDP1-211ENST00000555178 KCNB2Q92953 911 aa12.82□□□□□ -0.36
TDP1-211ENST00000555178 NAPBQ9H115 298 aa12.82□□□□□ -0.36
TDP1-211ENST00000555178 PGAP2Q9UHJ9 254 aa12.82□□□□□ -0.36
TDP1-211ENST00000555178 FZD1Q9UP38 647 aa12.82□□□□□ -0.36
TDP1-211ENST00000555178 EPHX2P34913 555 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 FMR1Q06787 632 aaKnown RBP eCLIP12.81□□□□□ -0.36
TDP1-211ENST00000555178 SHROOM1Q2M3G4 852 aaPredicted RBP12.81□□□□□ -0.36
TDP1-211ENST00000555178 JAKMIP1Q96N16 626 aaKnown RBP12.81□□□□□ -0.36
TDP1-211ENST00000555178 IDI2Q9BXS1 227 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 OSBPL5Q9H0X9 879 aaPredicted RBP12.81□□□□□ -0.36
TDP1-211ENST00000555178 TAF1DQ9H5J8 278 aaPredicted RBP12.81□□□□□ -0.36
TDP1-211ENST00000555178 ATP8A2Q9NTI2 1148 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 ZC3H4Q9UPT8 1303 aaKnown RBP12.81□□□□□ -0.36
TDP1-211ENST00000555178 IGSF3O75054 1194 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 GNAT2P19087 354 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 SLC4A3P48751 1232 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 TCEANC2Q96MN5 208 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 ADARB2Q9NS39 739 aaKnown RBP12.81□□□□□ -0.36
TDP1-211ENST00000555178 GGA3Q9NZ52 723 aa12.81□□□□□ -0.36
TDP1-211ENST00000555178 NEDD4P46934 1319 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 PRDM1O75626 825 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 LMOD1P29536 600 aaPredicted RBP12.8□□□□□ -0.36
TDP1-211ENST00000555178 ANAPC15P60006 121 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 PPARAQ07869 468 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 C12orf60Q5U649 245 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 TMED8Q6PL24 325 aaPredicted RBP12.8□□□□□ -0.36
TDP1-211ENST00000555178 DNAJC18Q9H819 358 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 E7EWF7 191 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 PLCG2P16885 1265 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 CASTP20810 708 aaKnown RBP12.8□□□□□ -0.36
TDP1-211ENST00000555178 EAPPQ56P03 285 aaPredicted RBP12.8□□□□□ -0.36
TDP1-211ENST00000555178 CHST3Q7LGC8 479 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 IL17RAQ96F46 866 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 TEPSINQ96N21 525 aa12.8□□□□□ -0.36
TDP1-211ENST00000555178 DCAF8L1A6NGE4 600 aa12.79□□□□□ -0.36
TDP1-211ENST00000555178 ADM5C9JUS6 153 aa12.79□□□□□ -0.36
TDP1-211ENST00000555178 ZKSCAN1P17029 563 aaPredicted RBP12.79□□□□□ -0.36
TDP1-211ENST00000555178 NEK4P51957 841 aa12.79□□□□□ -0.36
TDP1-211ENST00000555178 RASA3Q14644 834 aa12.79□□□□□ -0.36
TDP1-211ENST00000555178 RRP1BQ14684 758 aaKnown RBP12.79□□□□□ -0.36
TDP1-211ENST00000555178 IMMTQ16891 758 aaKnown RBP12.79□□□□□ -0.36
TDP1-211ENST00000555178 RNF20Q5VTR2 975 aa12.79□□□□□ -0.36
TDP1-211ENST00000555178 ZNF213O14771 459 aa12.78□□□□□ -0.36
TDP1-211ENST00000555178 RABEP1Q15276 862 aa12.78□□□□□ -0.36
TDP1-211ENST00000555178 NOL8Q76FK4 1167 aaKnown RBP12.78□□□□□ -0.36
TDP1-211ENST00000555178 LARP6Q9BRS8 491 aaKnown RBP12.78□□□□□ -0.36
TDP1-211ENST00000555178 GPHNQ9NQX3 736 aaPredicted RBP12.78□□□□□ -0.36
TDP1-211ENST00000555178 ZMYM6O95789 1325 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms